Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7m12
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 34   SYLVEVFGRLPINTAVINKKHKLIDEQSQNSFF 132
            S LV+V    P+N  V  +   ++DE S +SF+
Sbjct: 929  SSLVDV--STPVNKKVYKQNDYIVDESSSSSFY 959


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 97  KLIDEQSQNSFFGMIRNDPKL 159
           + +D Q    FF ++  DPKL
Sbjct: 27  RTVDAQRSLEFFDLLPEDPKL 47


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 346 FKMTLLIATFALLCFLGQTYSLEDYAPVVIRV 251
           F +  LI  F+++C     YSL D+   + +V
Sbjct: 3   FNIWWLILYFSIVCQAKAHYSLRDFKANIFQV 34


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -1

Query: 108 INQFMFFVYNCSVYWQPAKNF 46
           +N + FF+     +W P+K +
Sbjct: 229 LNTYYFFLRQAFPFWLPSKEY 249


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -1

Query: 108 INQFMFFVYNCSVYWQPAKNF 46
           +N + FF+     +W P+K +
Sbjct: 229 LNTYYFFLRQAFPFWLPSKEY 249


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
          protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 49 LPLNMIRTITIVYVV 5
          LPL +I  IT+ YVV
Sbjct: 28 LPLTLIVPITLTYVV 42


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 97  KLIDEQSQNSFFGMIRNDPKLETDKKG 177
           KL+D ++ +  +G+ +N P +  +  G
Sbjct: 489 KLVDSKAVSRLWGLHKNKPDMNYETMG 515


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 271 HNLLRNTFVQENTVMQMLQLRESF 342
           H L  NTF  +   ++M+   ESF
Sbjct: 225 HRLTSNTFDYDPKYIKMMDAGESF 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,376
Number of Sequences: 438
Number of extensions: 3516
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)