Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7m05
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 35 0.009
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.26
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 27 2.4
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi... 27 2.4
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb... 26 4.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.6
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 26 5.6
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 26 5.6
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 25 7.4
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 35.1 bits (77), Expect = 0.009
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 312 VSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAK 467
V L S+ PP + + P + +K+DPL +I +A P P + G T+K
Sbjct: 1935 VPLSSMPNAPPSVASNAKLPPASNNRKVDPLEDILQAMPPPTTRKARGKTSK 1986
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.26
Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 8/129 (6%)
Frame = +3
Query: 303 PAVVSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTY 482
P +PS+ +PP AP+ T A++ P + + + AP
Sbjct: 1493 PVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSSAPADN 1552
Query: 483 SMP----PVLGEAKEGSKRA----APAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALTK 638
SMP P + +A APA ++ FS G + G+ AA +
Sbjct: 1553 SMPHRSSPYAPQEPVQKPQAINNIAPATNLGTSQSFSPRMGPVNNSGSPLAMNAAGQPSL 1612
Query: 639 RPPAFTMAP 665
PA AP
Sbjct: 1613 AVPAVPSAP 1621
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 592 PGINPLASENFPRPVILKAGAALLLPSFASPSTGGI 485
P P + FPR V+ AG ++LP + P GI
Sbjct: 297 PQGEPPKTAQFPRMVVPSAGVHVVLPEYYCPPNIGI 332
>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 302 TSRSISPFPYR*TASRIEETKSSSFYFR 385
T+ SI PFP +S +E KSS+F FR
Sbjct: 182 TTLSILPFPVNHGSSFGQELKSSAFLFR 209
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 610 VVYVPGPGINPLASENFPRPVILKAGAALLLPSFASPST 494
V+YVP P I PL EN +I ++LLP + S +T
Sbjct: 335 VLYVPSPQIQPLWLENEDSNII--PTNSMLLPQWGSITT 371
>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 26.2 bits (55), Expect = 4.2
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +3
Query: 222 TPMGVRQNPWTPTKRRGPIAAEASSPGPAVVSLPSLI--GKPPPESRKPRAPAFTFGQKL 395
TP+ R +R P+ + S P+ V++P + GK S+ AP+ +K+
Sbjct: 18 TPISNRNGTKGAGSKRAPLGSTKQSNAPSSVTVPRTVLGGKSTNISKFISAPS---TKKM 74
Query: 396 DPLANIAKAGPGPASYNTEGMTAKA 470
P+ +I+ P N++G++ A
Sbjct: 75 SPM-DISMDSPTILEPNSQGISRSA 98
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 5.6
Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Frame = +3
Query: 243 NPWTPTKRRGPIAAE---ASSPG--PAVVSLPSLIGKP---PPESRKPRAPAFTFGQKLD 398
NP+TP + P+AA +SSP P+ P + P + KP +
Sbjct: 955 NPYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASSTVNPAHTYKPHGGSQIVPPPKQ 1014
Query: 399 PLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAK 578
P AN P AS + +A P T S+P + + + P S S +
Sbjct: 1015 P-ANRVVPLPPTAS---QRASAYEPPTVSVPSPSALSPSVTPQLPPVSS--RLPPVSATR 1068
Query: 579 GLMPGPGTYTTDRAAAALTKRPPAFTMA 662
+P P +T +++ RPP T A
Sbjct: 1069 PQIPQPPPVSTALPSSSAVSRPPIATSA 1096
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +3
Query: 225 PMGVRQNPWTPTKRRGPIAAEASSPGPAVVSLPSLIGKPPP-ESRKPRAPAFTFGQ 389
PMG P P PIA + PA LP PPP + P AP + +
Sbjct: 440 PMGAPAAP--PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAE 493
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = +3
Query: 213 SCETPMGVRQNPWTPTKRRGPIAAEASSPGPAVVSLPSLIGKPPPESRKPRAPAFTFGQK 392
S E ++ NP + +K + + + GP ++S P +I P + + + +K
Sbjct: 241 SSEMDSNLQTNPSSISKGKKNNSNNTTQKGPNIISSPQVINASSPVRKAGKKKS----KK 296
Query: 393 LDPLANIAKAGPGPASYNT 449
P + ++ + P ASYN+
Sbjct: 297 ALPTSPLSSSSP-DASYNS 314
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 490 HRYLVKRKKGVKELHRLSVSQVV 558
+++L +KG +ELHR +SQ++
Sbjct: 216 YQFLKDMRKGFRELHRKDLSQLI 238
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -2
Query: 246 GSGERPSESHTKLI 205
GS E+P+ES+TKLI
Sbjct: 246 GSDEKPTESYTKLI 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,474
Number of Sequences: 5004
Number of extensions: 54626
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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