Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7m05
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.49 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 22/85 (25%), Positives = 31/85 (36%)
 Frame = +3

Query: 390 KLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFS 569
           K +PL  +     G A+ N E  +         PP    + E     A +   +     S
Sbjct: 241 KCEPL-ELTGGNSGNAAGNNEDSSDSGAAASDRPPASASSNE---HEAESEHTSTPNFLS 296

Query: 570 EAKGLMPGPGTYTTDRAAAALTKRP 644
           EAK   P PG++    AA A    P
Sbjct: 297 EAKIFPPTPGSFNFSMAALATEHTP 321


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 417 KAGPGPASYNTEGMTAKAPNTYSMPPVLGEAKEGSKRAA 533
           K  P  A   T G+ +K+P     P + G+A   + +AA
Sbjct: 582 KRRPQRACSTTGGVPSKSPTLTHSPTMYGDALNANLQAA 620


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 255 PTKRRGPIAAEASSPGPAVVSLPSLIGKPPPE 350
           P + R   A E   PGP++       G P PE
Sbjct: 393 PPQIRQAFAEETLQPGPSMFLKCVASGNPTPE 424


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 564 TFHDL*Y*KPVQLFYSLLSLHQVPV 490
           T H+  Y K  +L+Y+++++ Q+PV
Sbjct: 322 TIHNNNYNK--KLYYNIINIEQIPV 344


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 586  INPLASENFPRPVILKAGAALLLPSFASPSTGGIE 482
            + PL+ E   RP+I     +L LP    P    +E
Sbjct: 1050 LRPLSMEKGTRPMIPDDNTSLALPKNEGPFRLNVE 1084


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,983
Number of Sequences: 438
Number of extensions: 4049
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)