Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7m03
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like |Schiz...    27   2.3  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    27   2.3  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   7.0  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   9.3  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    25   9.3  

>SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +3

Query: 516 KLLQNDYDGMILTSPRAVEAVSKCWDPTKFVIWNSKDVYTVGEMSSQ 656
           KLL N  D + +  PR        WDPT F     K+VY      SQ
Sbjct: 77  KLLDNLQDFLDIKEPRGTMISKDMWDPTDF----HKNVYASALSKSQ 119


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 614 ELERCVHSWRDELSKNKIVTRFGRARGYS 700
           ++ R V+ W+ E+ +NK + R GR+R +S
Sbjct: 133 DMHRQVYRWQQEVDQNKQIRR-GRSRSFS 160


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -3

Query: 715 FSALPAVAPSASKPSNNFIF*ELISPTVYTSFEFQMTNFVGSQH 584
           FS  P+++PS+++  N  +  E ++  +  + ++   +F  SQH
Sbjct: 74  FSLAPSLSPSSAQSHNTALITEPLTSFIGGTSQYPSASFSTSQH 117


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 495 NIEELSQKLLQNDYDGMILTSPRAVEAVSKCWDPTKFVIWNSKDVY 632
           NI    +K+LQN Y+   + S   V+ VSK     + +   S D +
Sbjct: 64  NIRNNLEKVLQNSYEFQSMVSLPKVDRVSKFLSDNESISQTSGDYF 109


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 423 DYQRIFRENNFETIFVEPLQFIYINIEELSQKLLQNDYDGMIL 551
           DY    RE NF    +EP+Q  Y +  E+ +KL     +G+I+
Sbjct: 270 DYSLFNREFNFFGNKIEPIQASYDHAVEVYKKLTGWLQEGVII 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,232
Number of Sequences: 5004
Number of extensions: 63829
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)