Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7m03
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.2  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   5.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   7.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 715 FSALPAVAPSASKPSNNFIF*ELISPTVYTSFEFQMTNFVG 593
           F   P V  S  +P + F++ E+ S   YT F  Q T+FVG
Sbjct: 358 FQTTPTV--SVEQP-HLFLYPEVSS--TYTGFGIQSTDFVG 393


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +1

Query: 91  VKNVKLKHEGETLKVIFPT 147
           ++ +++ HE ET++ +F T
Sbjct: 107 IRGLQINHEDETIRPVFST 125


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 468 VEPLQFIYINIEELSQKLLQNDYDGMILTSPRAVEAVSKC 587
           ++ LQ I +     SQK++   Y+G +      V++  +C
Sbjct: 26  IQTLQPICVGETGTSQKIIDEVYNGNVNVEDENVQSYVEC 65


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = +1

Query: 406 SKVSLRI-IKE----SLEKITLRQYSWSHCSL 486
           SKVS RI + E    SL  +  +QY+W H S+
Sbjct: 364 SKVSARIEMNEDDNTSLVSLDKKQYTWRHTSV 395


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 223 SKTLHQ*RLYVYLLEKNLFVTNNY 294
           +KT+H    Y Y    N +  NNY
Sbjct: 320 NKTIHNNNNYKYNYNNNNYNNNNY 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,071
Number of Sequences: 438
Number of extensions: 4492
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)