Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7l24
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    26   2.3  
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    25   5.2  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    24   6.9  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    24   9.1  

>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 192 IEVVRTVPRITEFILCQEKGCP 257
           + V+ TV     F +C E+GCP
Sbjct: 24  VTVLTTVVSFGSFYICNEEGCP 45


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 186 RFIEVVRTVPRITEFILCQEKGCPTCVFE 272
           R  + +R  P+  E + C + GC  CV++
Sbjct: 47  RIYDGIRVPPKPEEPLNCCQSGCAICVWD 75


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 75  SNFFLEWSVFHIYILYRSG 131
           SN    W VF IYIL R G
Sbjct: 233 SNVSQGWGVFTIYILTRGG 251


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +3

Query: 48  LISIFSCPQSNFFLEWSVFHIYILYRSGM*LPARRGSHDERVLVSCRFIEVVRT 209
           +ISIF   Q  F ++WS +   +L  +   L +    +  +V +   F +  +T
Sbjct: 137 IISIFPLHQPKFDIKWSKYWYQLLLGNKKQLDSINAEYGSQVALYFAFADFFKT 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,340,706
Number of Sequences: 5004
Number of extensions: 26262
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)