Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7l24
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1188 + 10219546-10219664,10220855-10223660                       27   6.5  
06_01_0929 - 7171395-7171676,7172019-7172219,7172438-7172524,717...    26   8.6  
04_04_1363 - 32898345-32898371,32898986-32899837,32900234-329005...    26   8.6  
01_06_1404 - 37062931-37063086,37064029-37064216,37064296-37064389     26   8.6  
01_06_0870 + 32601939-32602261,32602368-32602563,32603962-326040...    26   8.6  

>06_01_1188 + 10219546-10219664,10220855-10223660
          Length = 974

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 127 RECSYRRGAAATMRGFSCRAALSKWSEPYRELPN 228
           + C Y   A  T+ G      + +W + YRELP+
Sbjct: 371 KRCGYLPLAILTIGGILATKKIMEWGKFYRELPS 404


>06_01_0929 -
           7171395-7171676,7172019-7172219,7172438-7172524,
           7172973-7173023,7173883-7173987,7174074-7174185,
           7174284-7174366,7174434-7174557,7174822-7174973
          Length = 398

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 181 RAALSKWSEPYRELPNLYYVKKRDVQHA 264
           RA LSK+   YRE+ NL  +K+R+  HA
Sbjct: 293 RAELSKFETEYREIDNL--LKERNEIHA 318


>04_04_1363 -
           32898345-32898371,32898986-32899837,32900234-32900500,
           32900723-32901025,32902329-32902433,32903361-32903548,
           32903628-32903721
          Length = 611

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 76  QIFSSNGRCFTSIYYIDRECSYRRGAAATMRGFSCRAALSKWSEP-YRELPNLYYVKKRD 252
           +I     R    +YY  +E S         +G++ R  ++KW +P Y  L  L  ++ RD
Sbjct: 51  RISHQRSRYIYDLYYRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCIQTRD 110


>01_06_1404 - 37062931-37063086,37064029-37064216,37064296-37064389
          Length = 145

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 76  QIFSSNGRCFTSIYYIDRECSYRRGAAATMRGFSCRAALSKWSEP-YRELPNLYYVKKRD 252
           +I     R    +YY  +E S         +G++ R  ++KW +P Y  L  L  ++ RD
Sbjct: 51  RISHQRSRYIYDLYYRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCIQTRD 110


>01_06_0870 +
           32601939-32602261,32602368-32602563,32603962-32604093,
           32604181-32604303
          Length = 257

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 145 RGAAATMRGFSCRAALSKWSEP 210
           R AAAT+ G   R  L +W++P
Sbjct: 40  RRAAATLAGLGGRGPLGRWADP 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,413,040
Number of Sequences: 37544
Number of extensions: 166442
Number of successful extensions: 309
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)