Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7l18
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    28   1.4  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   1.8  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    27   3.2  
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...    27   3.2  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   9.8  
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    25   9.8  
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    25   9.8  

>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -1

Query: 580  VVALVRESYFLGVRFYQGLV*IFFLQLFLSIDHIFLIHNLLHPYTMILF 434
            ++ ++R +++L   F QGL  I  L+L  ++ HIFL +   H + +I+F
Sbjct: 986  IIDIIRNNWWL---FLQGLA-IDLLKLPWAVFHIFLRYLFSHSFLVIIF 1030


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/54 (29%), Positives = 32/54 (59%)
 Frame = +1

Query: 496 EKVEGKKSILTPDKSELPKSRIPEPKRRPKSGTWAVADVNLQKSRSLVSSYHEE 657
           +KVE ++S++   K+ +  ++ PE KRR +S   AV++ N++  R  + +   E
Sbjct: 13  KKVEREESLILGAKAMVASTKNPEVKRRLESNI-AVSENNIKYLRERIDALKVE 65


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 529 PDKSELPKSRIPEPKRRPKSGTWAVADVNLQKSRSLVSSY 648
           PD  E  K  + + K  P  G+W   D N+    SL+  +
Sbjct: 341 PDVFEKLKEYVNQNKFIPIGGSWVEHDTNIPNGESLIRQF 380


>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 409 FHPVIIQYKIGSLCMDVIDYE--LKRYDQWKEKVEGKKSILTPDKSELPKSRIP 564
           F P   QY+  SL  D +  +  L  ++QW ++    + I +P+ + L  +R+P
Sbjct: 14  FAPSRYQYEKSSLHRDALMGKDPLVLFNQWFQEATDDEGIKSPESTTLSTARLP 67


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 556 YFLGVR-FYQGLV*IFFLQLFLSIDHIFLIHNLLHPY 449
           +FL +R F+ G   I+F  LFL +   FLI  ++ PY
Sbjct: 365 FFLCMRNFFPGFT-IYFPALFLGVVGTFLIAPVIVPY 400


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 406 EFHPVIIQYKIGSLCMDVIDYELKRYDQWKEKVEGKKSI 522
           E HP + +     LC+D+   EL ++   +  V  K+S+
Sbjct: 10  ESHPKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSV 48


>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 376 IQYWYLVQCFVSILLSGLW 320
           I+Y  ++ C V+ILLS LW
Sbjct: 86  IRYSLILTCLVAILLSVLW 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,803
Number of Sequences: 5004
Number of extensions: 49244
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)