Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7l16
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    35   0.012
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    30   0.33 
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha...    30   0.33 
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    29   0.43 
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    29   0.57 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    27   3.1  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    27   3.1  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.0  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   4.0  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    26   4.0  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    26   5.3  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    26   5.3  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    25   7.1  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   7.1  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   9.3  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   9.3  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    25   9.3  
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    25   9.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.3  

>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 22/76 (28%), Positives = 37/76 (48%)
 Frame = +3

Query: 315 ERAACNDEYHLSEYVKEEIGWRTADKIFDIKRTFKNAVELGASRGYVSRHFLPDSVEKVT 494
           E     +EY   E++K  +  RT D+++DI R  +  V  G     V +H L    +K+ 
Sbjct: 370 EEEPTTEEYE-EEFLKTYVP-RTLDEVYDIDRDTE-IVNAGGVNSLVYKHLLNTDFQKLD 426

Query: 495 LCDTSRTHLDKAIVGE 542
           L DT++   D+ +  E
Sbjct: 427 LNDTTKNQNDQILPNE 442


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 12/135 (8%)
 Frame = +3

Query: 246 QKTASSIYRTMNIFDRKTKMIQRERAACNDEYHLSEYVKEEIGWR-TADKIFDI---KRT 413
           +K  + + +T N     +   Q   AA  D Y  + +  E   WR T DK+ DI   +R 
Sbjct: 176 EKNNAKLNKTQNAITASSSDYQSAVAAVRDSY--ARWTNE---WRSTCDKLQDIEEERRH 230

Query: 414 FKNAV----ELGASRGYVSRHFLPDSVEK-VTLCDTSRTHL---DKAIVGEGVQYEKMIM 569
           F  +V     L  SR   +     + + K +  C  S+  L   D    G G+       
Sbjct: 231 FLKSVMWTFTLLISRSCFNDDQACERIRKNLEQCSVSQDVLEFIDAKSTGTGIPQPPKFY 290

Query: 570 DEENFELPDDSVDLL 614
           D    E+PDDSV+L+
Sbjct: 291 DYYKGEVPDDSVELV 305


>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 20/81 (24%), Positives = 34/81 (41%)
 Frame = +3

Query: 396 FDIKRTFKNAVELGASRGYVSRHFLPDSVEKVTLCDTSRTHLDKAIVGEGVQYEKMIMDE 575
           F +  T    +ELGA  G ++   +    +++   DT    LD  +  +    +  +   
Sbjct: 32  FSVNET-STILELGAGSGKLTPRIIASQPKEIIAVDTYVEMLD-VLKKKFPNVDCRVGSA 89

Query: 576 ENFELPDDSVDLLVSSLTFHW 638
               L D+SVDL+     FHW
Sbjct: 90  MAIPLEDESVDLVACGQCFHW 110


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 582 NFPHPLSSFHIERPHQLLPYRDEFWMCHTVSPS 484
           N+P+PL + H+     L  YRD+  + H V+PS
Sbjct: 249 NYPYPLDASHLSSQQLLSMYRDQ--VSHGVTPS 279


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
 Frame = +3

Query: 186 AKNIQADIRNIVQNSSYAAKQKTASSIYRTMNIF-DR---------KTKMIQRERAACND 335
           A+N+Q D+    + S    K +  + +Y + N+F D+         +TK++  ERA  ++
Sbjct: 360 AENVQGDLIFTCEISLTVLKHEIRTKLYNSNNVFLDKGQKGVISNIQTKILNFERAIPSE 419

Query: 336 EYHLSEYVKEEIGWRTADKIFDIKRTFKNA---VELGASRGYVSRHFLPDSVEKVTLC-D 503
             H  E +K   G    +++  IK+ F  A   + L      +  +   DS+E   +C  
Sbjct: 420 MKHYFEILKAGNG--LPEELDIIKQHFFTACVEIYLSYCNTLIYLYLADDSIEGSKICLS 477

Query: 504 TSRTHLD 524
           T+R  +D
Sbjct: 478 TARAAID 484


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 276 MNIFDRKTKMIQRERAACNDEYHLSEYVKEE--IGWRTADKIFDIKRTFKNAVEL 434
           M I + K  ++QR+     DE  +SE  +EE  +  +     F++    K A+EL
Sbjct: 658 MEILNDKISVLQRQLTDVKDELDVSEEEREEAIVAGQKLSASFELMSNEKQALEL 712


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 457 DTYPREAPSSTAFLNVLLMSNILSAVR 377
           D YPR  P STA L+V L+S + S  R
Sbjct: 580 DDYPRAQPPSTAELHVDLLSWMTSFTR 606


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 457 DTYPREAPSSTAFLNVLLMSNILSAVRQPISS 362
           +T   E PSS + +NV +++ + S  RQ ISS
Sbjct: 156 NTASHEVPSSKSDVNVQMLARLKSKSRQKISS 187


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 615  PADQRCRLVIQNFPHPLSSFH 553
            P    C LV+ NF HP SS +
Sbjct: 1007 PVISACELVVNNFLHPQSSLY 1027


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 213 FVYLPVYFLHSIPIKNDVNLD 151
           F+Y P+Y +H  PI +++NL+
Sbjct: 48  FLY-PIYLIHGQPIDDEINLE 67


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 161 TSFFIGIECKKYTGRYTKHRSK*FV 235
           +SF++G+ CK Y     KH  K +V
Sbjct: 77  SSFYLGVICKLYEKAIDKHSGKKYV 101


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 432 LGASRGYVSRHFLPDSVEKVTLCDTSRTHLDKAIVGEGVQYEKMI-MDEEN 581
           +GA    V+    PD VEK+ + D S  + D      G  + KMI +DE N
Sbjct: 96  MGAKTAMVTALKWPDKVEKLVVVDNSPWYQDLP-RDYGAYFRKMIQIDEAN 145


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 364 SLTYSDKWYSSLQAALSLCIILV-FLSNIFIVRY 266
           S+  S  W+ +  + LS+C + + FL+ IF  R+
Sbjct: 78  SINTSRSWFRAFLSFLSICFLFISFLNFIFSTRF 111


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 588 LPDDSVDLLVSSLTFHW 638
           L D+SVDL++ +  FHW
Sbjct: 98  LEDESVDLVLCAQCFHW 114


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 357 VKEEIGWRTADKIFDIKRTFKNAVELGASR 446
           VKE I  R  + + D+    KNAV  G +R
Sbjct: 315 VKESIELRPEEAVIDVDELDKNAVLFGGTR 344


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
 Frame = -2

Query: 576 PHPL-----SSFHIERPHQLLPY--RDEFWMCHTVSPSPRCPAGNAVIHIHERLP 433
           PHP      S+F    P  L P   RD  +   T+SPS    A ++   IH+R+P
Sbjct: 355 PHPRVFSANSAFSTTSPPPLTPSTSRDYPFSASTISPSTPFSAYSSSHGIHQRIP 409


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 591  VIQNFPHPLSSFHIERPHQLLPYRDEFWMCHTVSPSPRCPAGNAVIHIHERLPVLQ 424
            +++N PH       E   + L Y+D  + C+  +PSP+      VI     L VL+
Sbjct: 1626 ILKNAPHLKKIMSNE---EFLLYKDILYRCYEDNPSPKAKDYAEVIFGENYLSVLR 1678


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 308 YHLSFPIKYIHRSVYRTCSLLFCCIRTILNDVSYI 204
           Y+LSF I +   S++ +  +LF   +++L+ + +I
Sbjct: 9   YNLSFFISFTFSSIFFSSLILFLVYKSVLSKLFFI 43


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 585 ELPDDSVDLLVSSLTFHWV 641
           E+P +S D++ S+   HW+
Sbjct: 91  EIPSESFDVVFSNAALHWI 109


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 580 ILNYQTTALICWF 618
           +L+Y TTA  CWF
Sbjct: 54  VLSYDTTAKCCWF 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,752
Number of Sequences: 5004
Number of extensions: 47503
Number of successful extensions: 140
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)