Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7k21
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 83 3e-17
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 28 1.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.0
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.1
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 4.1
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 7.2
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.2
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 25 9.5
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 83.4 bits (197), Expect = 3e-17
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Frame = +3
Query: 168 GKSLKLD--TAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARF 341
GKSLKLD T +D + + + + +++ + L+GNT+G AA +S+ + S +L+IA F
Sbjct: 8 GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 67
Query: 342 SDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLL 497
SD+FTGR+K EIP AL L ++ +L + LSDNAFGP E L L
Sbjct: 68 SDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPTAQEPLIDFL 118
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 429 LAVLDLSDNAFGPIGVEGLAKLLQS 503
L VLDL DN F +G LA L+S
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKS 242
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 28.3 bits (60), Expect = 1.0
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 7/121 (5%)
Frame = -3
Query: 442 SSTAKRAPAAIMPSPKALKAGGISVFILPVNMSENLAILSSGCDSKALEIAWAAVTPSVL 263
SST +P+A + S A +S + S N IL++ +S A+ + + S+
Sbjct: 164 SSTPVFSPSASVSSKVASSVSYVSSEPSDSSSSTNTVILTTSVNSPAVSSSETLTSVSIT 223
Query: 262 PVNARYWRFGHLLIASTICCASFAVSNFR-------DFPEKSTPVSGCAGSSSTVFNEFK 104
+ Y + AST ++ VS D P + +S A SSS+ E
Sbjct: 224 STESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPASSSSSYLVETS 283
Query: 103 S 101
S
Sbjct: 284 S 284
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.0
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = -3
Query: 508 TSLCSSLARPSTPIGPNALSLRSSTAKRAPAAIMPSPKALKAGGISVFILPVNMSENLAI 329
+S SS + P+T P++ S S T+ + S L +S ILP + S ++I
Sbjct: 100 SSPVSSYSDPATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEVSI 159
Query: 328 LSSGCDS 308
SS S
Sbjct: 160 SSSSLSS 166
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 157 TPVSGCAGSSSTVFNEFKSKVAILQF 80
TP+S C G+ S +FN + A+L F
Sbjct: 213 TPMSACGGTISDLFNPIQRTGALLVF 238
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 156 VDFSGKSLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESH-PELKI 332
+D S +L+ + A++ ++ K P L+YL L+GNT + H + +S+ LK
Sbjct: 905 LDISTNNLQNLAVEKAEK--KSLTKLPQLEYLNLSGNTWFRFSEHEDTNFTKSYLKNLKF 962
Query: 333 ARFSDMFT 356
D+ T
Sbjct: 963 LSIMDLNT 970
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 90 MATFDLNSLNTVLDEPAQPETGVDFSGKSLKLDTAKDAQQIVDAINKCPN 239
M F S+ LD A P+TG+D + D Q ++D K N
Sbjct: 99 MEAFRNESIYVFLDL-ANPKTGIDRDTPTWNTDQFSSYQSVIDTFQKYNN 147
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 267 YCRSTQDIGGSGIY*SRLQFVVHLSRYPILEIFQ 166
Y R +D GG + SRL V L+R+ + + Q
Sbjct: 527 YLRKARDFGGDNEFESRLIIRVQLARHVVRKCLQ 560
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 146 GNRCRFFWKISKIGYRERCTTNCR 217
G RCR FW GY + CR
Sbjct: 392 GVRCRTFWLPDTFGYSSQIPQICR 415
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,374
Number of Sequences: 5004
Number of extensions: 51836
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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