Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7k19
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   1.9  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   3.3  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    26   4.3  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   5.7  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   7.5  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   9.9  

>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/16 (56%), Positives = 15/16 (93%)
 Frame = -1

Query: 529  PIILMQALQVVEYLCS 482
            P+I++QAL++V +LCS
Sbjct: 1069 PVIMVQALEIVAFLCS 1084


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 322 ITNYFHSPNYFFISKIENNFEKI*F 396
           IT YF+SP +F++ +    F++I F
Sbjct: 365 ITEYFYSPPHFWLDETSEIFKRIGF 389


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +2

Query: 35  YHFSYNFKTVWMY*NMQGRVKEHAFCV*KVFVEIPSKLVVF 157
           Y FS +F  +++  N+Q R+KE  +    ++ ++ SKL+++
Sbjct: 5   YVFSNSFSFLYLMVNVQCRIKEIMYWNICLYWDVFSKLIIY 45


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 23/84 (27%), Positives = 39/84 (46%)
 Frame = +3

Query: 387 NMIFLEKLLSVINELTKKKSTYTQHPLLRLQLLHKYSTTCNACISMMGLMSCNLLITAAH 566
           N+  LE+LL   NE+ + +   +   L+ LQL +   T   A   M+ L    +   A H
Sbjct: 733 NLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKASQPMIHLRILRISNNAIH 792

Query: 567 FFDLSPI*DGFPYIYPPYLNS*RF 638
             ++    D FP++   Y++  RF
Sbjct: 793 QLEV----DQFPHLRTLYMDLNRF 812


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +3

Query: 39   TFHTILRQYGCIEICRVESR--STLSVYKKC 125
            T+H +L  YG  E+C  +S     +  Y +C
Sbjct: 1058 TYHKLLWNYGAAEVCATKSELDGAICHYSEC 1088


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 464 RVLSVCTFFFGEFIYY 417
           RV   C FFFG  ++Y
Sbjct: 116 RVFQFCAFFFGGIVFY 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,629
Number of Sequences: 5004
Number of extensions: 56958
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)