Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7k19
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    25   0.87 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   3.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   3.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.1  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 433 VSSFITDNNFSKKIIFFQNY 374
           +S++  DNN++KK+ +  NY
Sbjct: 93  ISNYNNDNNYNKKLYYNINY 112


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -1

Query: 433 VSSFITDNNFSKKIIFFQNY 374
           +S++  +NN++KK+ +  NY
Sbjct: 93  ISNYNNNNNYNKKLYYNINY 112


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -1

Query: 433 VSSFITDNNFSKKIIFFQNY 374
           +S++  +NN++KK+ +  NY
Sbjct: 331 ISNYNNNNNYNKKLYYNINY 350


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 272 LNKAEVFLSFFNSLC 228
           LN A VF+  FN +C
Sbjct: 270 LNMASVFMRIFNLIC 284


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 272 LNKAEVFLSFFNSLC 228
           LN A VF+  FN +C
Sbjct: 238 LNMASVFMRIFNLIC 252


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 147  NFDGISTNTFYTQKACSLTLP 85
            NFD  STN F   K C    P
Sbjct: 1600 NFDHDSTNDFVGPKNCLFRKP 1620


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,188
Number of Sequences: 438
Number of extensions: 3989
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)