Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7k18
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    29   0.77 
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    29   0.77 
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    28   1.3  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   2.3  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.1  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    26   4.1  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   4.1  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   5.4  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   5.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   7.2  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   9.5  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -3

Query: 140 RNMVATTFLLFIEDYSRKSLGYNFVCLYSHLW 45
           +N+V+  FL  +  Y+R++ GY+F  ++S +W
Sbjct: 430 QNLVSRVFLEQVMIYTRQNAGYDFWQVHSTIW 461


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 606 PVCAMGTFLSPLTASGTFLGAVMVSTP-SDDSRDSTVSGAAP 484
           P  +   FL+P+T SGTF  +   + P S   R +T S A P
Sbjct: 384 PATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVP 425


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 2   INTNNKPSTSVEFRSTSENTNIQSYIQAIFGSNLQ*KARM-SLLPYFFDDFGSRRPRRLL 178
           +NTN+ P TS +      NT +Q++      SNL    +  ++ P FF   G  R   + 
Sbjct: 284 LNTNDGPVTSTDNNCDQLNTRMQAWNNGFNYSNLNGDIQYPAVTPKFFQQEG--RALNVS 341

Query: 179 DQHFG 193
           D +FG
Sbjct: 342 DCNFG 346


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 239 LLNREYYRPWRHLAAAARDVGSSIKVDKDKFQV 337
           LLN  Y + W+ L++  + +  S   DKD  Q+
Sbjct: 358 LLNGRYKKRWQQLSSEVKKISDSASSDKDVKQL 390


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 65  IQSYIQAIFGSNLQ*KARMSLLP-YFFDDFGSRRPRRLLDQHFGLALTPDDLLSVAAGPL 241
           I S + A+F  N++  A++  LP   FD    +   R    +       D+LL   A PL
Sbjct: 168 ISSLLSAVFEINME-NAKIRHLPSVIFDGLIEKNKDRPYHINLSCKRAYDELLPRIAVPL 226

Query: 242 LNREYY 259
           L  EY+
Sbjct: 227 LPHEYH 232


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +2

Query: 269 RHLAAAARDVGSSIKVDKDKFQVNLDVQHFAPEEI 373
           +H+     +V   ++VDK+K  ++L  +  +PE++
Sbjct: 61  KHIRVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDV 95


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 588 TFLSPLTASGTFLGAVMVSTPSDDS-RDSTVSGAAP 484
           +F+S +TA  T  GAV+V  P+  +  ++ VSG+ P
Sbjct: 783 SFMSTITAHDTSSGAVIVVEPTAGTVTETIVSGSIP 818


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 485 GAAPETVESRLSSDGVLTITAPRKVPD 565
           G  P T+ES ++ D  L I   RK+ D
Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISD 478


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 540 SLRRGRCLTPSRERERCPSHRPVPFARRS 626
           S RR R   P R R R  S RP P A  +
Sbjct: 198 SRRRSRSRRPGRSRSRRRSRRPSPSAEHN 226


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 262 SVVFPVQQRPGSDTKKIIWC*GKAKMLVQQ 173
           + VF + Q PG+D   I  C G  ++LV +
Sbjct: 661 TAVFAIMQNPGNDWDMIRACIGSKEILVPE 690


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 62   NIQSYIQAIFGSNLQ*KARMSLLPYFFDDFGSRRPRRLLDQHFGL 196
            N  S I A+    L   ++M   PY    F     +RL+ +H GL
Sbjct: 972  NRDSEIAAVIRDTLTIDSKMDGKPYKVGKFAHTLRKRLMREHLGL 1016


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,883
Number of Sequences: 5004
Number of extensions: 48337
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)