Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7k13
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa... 31 0.15
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 28 1.4
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 27 2.4
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 27 2.4
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 3.1
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 26 4.1
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 26 4.1
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ... 26 4.1
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 5.5
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 25 7.2
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 7.2
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 25 7.2
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 25 9.5
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 25 9.5
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 25 9.5
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 9.5
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 9.5
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 25 9.5
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 9.5
>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 266 NQNFWQFYRVYCSRRV-KY-EIEMPPGSLYLPSSPRRSTFCIETRSDG 129
N+N+W ++ +C R KY + + G LYLP R + ++ R G
Sbjct: 174 NRNYWAYFEDWCRRLTSKYGSVTIMTGPLYLPKKNERGQWEVQYRVIG 221
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = -1
Query: 508 SLALLKTCASLESSCTIGLLGPNTKSIIFLHLAHLASSSDPLFVLFCSLLCKIAIPKTN 332
SL +LK +L S T+G + PN ++ L + +S ++ L CS + +A+ +++
Sbjct: 436 SLQVLKKLQTLHLSFTLGDIIPNYLTLADYLLNFVKTSFAQIYELVCSFVNNVAVMESS 494
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/96 (18%), Positives = 37/96 (38%)
Frame = +3
Query: 225 PTAIHTVKLPKILV*QRRYTTFESAKSVTPSIPVVKLVLGIAILQSKLQKSTKSGSEDEA 404
P+ +KL ++ +T AK +P + ++ I Q L ++ +
Sbjct: 449 PSTPLNLKLRNFIISSSEDSTSPKAKEFDRPLPSTEFLVAINKSQEALLNNSPNSKSGST 508
Query: 405 KCAKCKKIIDLVFGPNKPIVHEDSKDAHVFNKASDK 512
+ + + DL+ + HED ++ N S K
Sbjct: 509 QLSASTCLSDLISPQLSILSHEDKRENQSVNSESSK 544
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -1
Query: 454 LLGPNTKSIIFLHLAHLASSSDPLFVLFCSLLCKIAIPKTNLTTGMDGVTDLADS 290
+L P I FL L+ L +S FVL C++ + T G D + D+
Sbjct: 755 ILAPYINHIFFLLLSRLKNSRTERFVLRCTIFFFFVASEQTGTCGPDNLIQGVDA 809
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = -1
Query: 586 SSIIFSHLTQLFSSALNLDKATSLHLSLALLKTCASLESSCT 461
S + + LT+LF ++ + KA++ + LLKTC+ L SSC+
Sbjct: 500 SDTLDAWLTRLFETSFAI-KASAFQ-NPQLLKTCSQLLSSCS 539
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +3
Query: 468 EDSKDAHVFNKASDKCKDVALSRLSADEN 554
E SK V +++SD+ KD ++R++AD++
Sbjct: 53 ETSKKLLVSHESSDRLKDQEVARINADDD 81
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = -1
Query: 622 YLSSHFASLPKISSIIFSHLTQLFSSALNLDKATSLHLSLALLKTCASLESSCTIGLLGP 443
Y+S H+ L +ISS + S+ + S+ N +K + L + +L ++ C P
Sbjct: 306 YISLHYDFLGQISSHLSSYKEKFEESSKNFEKLVIMSLRVFIL----VIQEFCNTKSSHP 361
Query: 442 NTKSIIF 422
T +++
Sbjct: 362 ETAQVLY 368
>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +3
Query: 312 PSIPVVKLVLGIAILQSKLQKSTKSGSEDEAKCAKCKKIIDLVFGPNKPIVHEDSKDAHV 491
P+ ++L I ++ ST K I+ FG K IVHE SKD ++
Sbjct: 309 PTKSQLELYQSILRKRANQVSSTSLTKSSSPKPLPSSAIVKFDFGNGKSIVHEFSKDDNI 368
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 363 KLQKSTKSGSEDEAKCAKCKKIIDLVFGPNKPI 461
KL S++ S+D+ K CK +D+ G + PI
Sbjct: 57 KLDPSSEDFSQDDQKQIFCKLCVDICNGCSTPI 89
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 442 NTKSIIFLHLAHLASSSDPLFVLFCSLLCKIAIP 341
N + IFL A L S+ P V F SLL A+P
Sbjct: 394 NAVTFIFLISAALLCSNLPSAVAFTSLLSAAAVP 427
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -1
Query: 157 HFVSKLEVMGVTSVENYIFIFFLYRYMIFFIFENY 53
HF+ K+ + V + F F + ++F+IF ++
Sbjct: 102 HFLEKISMFDTFLVRVFQFCAFFFGGIVFYIFNHF 136
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +3
Query: 546 DENSCVKCEKIIDEIFGKDAKWDDKYMLGECYTLG 650
D VKC+K I G K D +C+T G
Sbjct: 371 DNKYAVKCKKCRKPILGISVKGSDGEYHSQCWTCG 405
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -1
Query: 352 IAIPKTNLTTGMDGVTDLADSKVV*RRCQTKIFGNFTVCIAVG 224
IAI + +L TG+D +TD+ + C + + C G
Sbjct: 35 IAIKQIDLETGIDDITDIEQEVFMLSNCNSSNVIQYYGCFVDG 77
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 624 CTYHPTLRLYQRSHQLSSRI*HNYFHRHLISIKQHLCIY 508
C Y L Y S++ ++I H FH +L I ++ Y
Sbjct: 150 CDYCSPLEPYDESYRQENKIKHLSFHAYLRKINSNVNKY 188
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 284 YLRICQIGYTVHTSSQIGFRYCDFAKQTTKE 376
+ R+C+ +VH S Q G D K TKE
Sbjct: 169 FTRLCRSASSVHISYQNGLYCIDKDKSLTKE 199
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 288 FESAKSVTPSIPVVKLVLGIAILQSKLQKSTKS 386
FE A+ V PSI + G+A ++S Q+ T S
Sbjct: 463 FEEARRVQPSIIFFDEIDGLAPIRSSKQEQTHS 495
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 291 ESAKSVTPSIPVVKLVLGIAILQSKLQKSTKSGS 392
ESAK ++ S+ V V G + ++ +STK GS
Sbjct: 270 ESAKRISLSMKEVNQVTGEDLNPDQVSRSTKKGS 303
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 634 SPSMYLSSHFASLPKISSIIFSHLTQL 554
SP +LSS F + K+ II HL +L
Sbjct: 534 SPINFLSSMFIAFYKLMPIISKHLNEL 560
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -1
Query: 505 LALLKTCASLESSCTIGLLGPNTKSIIFLHLAHLASSSDPLFVLFCSLLCKIAIPKTNLT 326
LA + TC +L SC + GP + +L L S + V+F + + +T
Sbjct: 359 LATITTCIALIGSCLLSFAGPPRAQLAGYYL--LMVSPGAMIVMFAIISSNASGYTKKVT 416
Query: 325 TGM 317
G+
Sbjct: 417 VGV 419
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,779
Number of Sequences: 5004
Number of extensions: 56918
Number of successful extensions: 181
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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