Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7k12
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 33 0.051
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 29 0.63
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 27 3.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 3.4
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 4.4
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 26 4.4
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 26 4.4
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 26 5.9
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 26 5.9
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 7.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 7.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 7.8
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 25 7.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 7.8
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb... 25 7.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 7.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 7.8
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p... 25 7.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 7.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 7.8
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 32.7 bits (71), Expect = 0.051
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 61 KCMYHIKNPIDLTEEDEIC-LKINEKVLKFIKGPNNKMTELETRQDELLNKLEILYERIK 237
+C+ N T E+ I L+ ++ K ++ + L+ +D LN++EIL ER+
Sbjct: 213 ECLEESSNRAIETYENRIAELEAQLEMYMSGKSEDDLLFSLQQERDYALNQVEILQERVD 272
Query: 238 TISSQCKLDNMSANIQSSNASKVESVIT 321
T+ Q K ++ +AN + S+ +T
Sbjct: 273 TLMKQ-KANSSTANEKLSHMESSSPTLT 299
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 29.1 bits (62), Expect = 0.63
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 136 VLKFIKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMSAN 279
VL +KG +T+ T + ELLN+ ++ +RI + + S+N
Sbjct: 225 VLFVVKGGERNITDQRTLEYELLNRFHVISKRIDIAELNSLIHDKSSN 272
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -3
Query: 354 IRTQHQDNFLWCNYRFDF*GI*GLNISTHIVKLTLRANCL 235
++ +HQDN LW ++F I L++S +V++ R N L
Sbjct: 122 LKEEHQDNCLWRLHKFP-PDIYHLSVSAELVQVGRRFNSL 160
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 372 EYHFEKIQFTNTYNLSCPF 428
EY + FTN YN SC +
Sbjct: 215 EYRYVDFNFTNVYNTSCEY 233
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +1
Query: 121 KINEKVLKFIKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMSANIQSSNAS 300
K+N + + P + +ELE + E L KL +L E +K + + + N+
Sbjct: 870 KVNILESRLLSNPLHNFSELEEKYAEYLRKLALL-EEVKDLKKKLSKARSIMQLDELNSR 928
Query: 301 K 303
K
Sbjct: 929 K 929
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 574 LGNVNILRYLSLAYPTII-PYDHNDHIVDNLLDICHVL 684
+G + IL L ++ P ++ Y+H+D I +L CH L
Sbjct: 1745 VGYLRILSCLLVSLPAMVYTYEHSDPITFDLSVFCHKL 1782
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 286 SSNASKVESVITPEEVVLVLSPDSLPWYLNI 378
S++ + S+ITP E + D + WY++I
Sbjct: 410 SASKQPLHSLITPPEQEFIQKLDQIGWYISI 440
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +1
Query: 85 PIDLTEEDEICLKINEKVLKF 147
P+ +T+ED +CL+I+++V +
Sbjct: 763 PLYITKEDIVCLEIDDRVFHY 783
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 90 DRIFNVVHTFRQLYFIIVVNDPLHNI 13
D IF+ + FRQL I+ ND LH +
Sbjct: 369 DFIFHEGNHFRQLKLILEANDILHQL 394
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +1
Query: 193 DELLNKLEILYERIKTISSQCKLDNMSANIQSSNASKVESVITPEEVVLVLSPDSLPWYL 372
D + N+L +R + SQ K AN+ N++ +E I +E +L +PD L +
Sbjct: 32 DMITNELRNAIQRQRE-GSQSK--PQGANVDRVNSTNLEKDIDLQESLLTNNPDLLQTFK 88
Query: 373 NIILK 387
++K
Sbjct: 89 EAVMK 93
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 346 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 489
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 346 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 489
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 346 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 489
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 310 SVITPEEVVLVLSPDSLPWYL-NIILKKSNLPIHTTCHVHSSVPSEKLAKIKAFTQKLKT 486
+++ EE ++SP LP YL N+ S+ + + + + + QKL+T
Sbjct: 296 TILLREETKSLISPKKLPGYLENLFKSDSDNIVVALLLMQHKISNGNFRGALSIYQKLRT 355
Query: 487 SENPKVNLRLIF 522
S +L +++
Sbjct: 356 SLEASQSLSVLY 367
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 346 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 489
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 281
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 132 FIDFQTNFIFFCKIDRIFNVVHTFRQL 52
FID+ + FFCK+ IF + F L
Sbjct: 84 FIDYSSLITFFCKLCVIFGLGFVFTYL 110
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 346 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 489
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 346 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 489
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 111
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 85 PIDLTEEDEICLKINEKVLKFIKGPNNKMTEL 180
PID + +EICL+ + VLK + +K E+
Sbjct: 4 PIDSKKLEEICLEAAQPVLKASEYDGDKTAEM 35
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 346 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 489
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 346 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 489
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,134
Number of Sequences: 5004
Number of extensions: 51560
Number of successful extensions: 201
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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