Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7k08
(461 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 28 4.2
03_06_0775 - 36174098-36174204,36174540-36174594,36174690-361747... 28 4.2
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 27 7.3
04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337 27 7.3
02_05_0327 + 27980841-27980972,27981673-27981763,27981848-279819... 27 7.3
05_05_0342 - 24231924-24232178,24232271-24232653,24232778-24232790 27 9.7
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 27 9.7
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 27 9.7
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +2
Query: 62 VKSCVVLLYDSNKSPFCPNILDSPVPENVFLIIVFSIDSCNEQAPEPGRHCSDGESAPEL 241
++ C+ LL DSN+ P + S +P V I+ + ++ P+ +D P L
Sbjct: 734 LEDCIQLLIDSNRIPEAALMARSYLPSKVSEIVAIWRNDLSKVNPKAAESLADPSEYPNL 793
>03_06_0775 -
36174098-36174204,36174540-36174594,36174690-36174741,
36174947-36175028,36175110-36175204,36175339-36175727
Length = 259
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 195 LNQEDIAAMENQLR-NCVEDDRKYWQVNDVK 284
LN++D +EN + +C+ DD Y+++ D+K
Sbjct: 87 LNEKDSKRLENLIAPDCIIDDNAYYKLLDIK 117
>12_02_0858 +
23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -3
Query: 240 NSGADSPSLQCLPGSGACSLQLSIENTIIKNTFSGTGLSRILG 112
+S +S S++C PGSG+ S + NT SG G S +LG
Sbjct: 568 SSQLNSASVKCSPGSGSSSTTMGPPRPF--NTVSG-GASSLLG 607
>04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337
Length = 516
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 191 APEPGRHCSDGESAPELRRRRQKILAS 271
AP P + E AP LRRR ++++A+
Sbjct: 5 APAPAAGAREDEDAPALRRRLRRLVAA 31
>02_05_0327 +
27980841-27980972,27981673-27981763,27981848-27981900,
27981990-27982154,27982544-27982662,27982880-27982997,
27983096-27983173,27983326-27983424
Length = 284
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +2
Query: 56 CFVKSCVVLLYDSNKSPFCPNILDSPVPENVFLIIV 163
CF+ C+++ +D+ ++LD P+ ++ +IV
Sbjct: 219 CFLARCIMMCFDAFDKKADLDVLDHPILNFIYYLIV 254
>05_05_0342 - 24231924-24232178,24232271-24232653,24232778-24232790
Length = 216
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 306 KTYEEFADRVSAAHLRPLEKSDYKQKIRRTWNQCA 410
K + E+A+R++ LRP EKS + + + N+ A
Sbjct: 114 KEFAEYAERIAKDLLRPYEKSYHYIGLMKAMNKLA 148
>02_03_0180 -
16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 288 DAIHTAKTYEEFADRVSAAHLRPL 359
D I +T+ F RV +HLRP+
Sbjct: 384 DGIKLLETFSRFRTRVDVSHLRPI 407
>02_02_0331 +
9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/58 (22%), Positives = 24/58 (41%)
Frame = +3
Query: 189 KPLNQEDIAAMENQLRNCVEDDRKYWQVNDVKCDAIHTAKTYEEFADRVSAAHLRPLE 362
+PL+ E ++ N+L+ C +R ++ D VSA + P+E
Sbjct: 788 EPLHDEALSENSNELQQCTTSERSSTMISPAAADNSMITMAATSVESSVSADKVSPVE 845
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,395,936
Number of Sequences: 37544
Number of extensions: 258620
Number of successful extensions: 633
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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