Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7k07
         (186 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    23   4.0  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    23   5.3  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    23   7.0  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    23   7.0  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    23   7.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    22   9.3  

>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 186 FFFYSNT*DFISLKTFQLQLRITFQSPAVD 97
           FFF+  T     L  ++L L ++FQ+P+VD
Sbjct: 276 FFFFHET-----LLRYRLNLIMSFQNPSVD 300


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 52  IFLFNNVFIFYHPIDVHCWAL 114
           IFL NN+  F HP    C +L
Sbjct: 700 IFLNNNILPFGHPFVKECRSL 720


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 70  VFIFYHPIDVHCWALECNSKL*LECLQGNKI 162
           VF+ Y PI    +ALE    L LE     K+
Sbjct: 439 VFLKYQPIPFEWYALESMESLNLEPAPDRKV 469


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 32   VQPLLGLYFYLITFLYS 82
            +  ++GLYF+ + FLY+
Sbjct: 1095 IHNVVGLYFFWLLFLYA 1111


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 114 QSPAVDVYGMIEYKNVIK*KYNPKS 40
           + P VD    I Y N +K +Y P S
Sbjct: 250 EKPRVDFNYAIAYMNKVKARYPPNS 274


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 46   RIIFLFNNVFIFYHPIDVHCWALECN 123
            R++ L N  F+ YH  DV+  AL+ N
Sbjct: 970  RMLPLENGSFLGYHIADVYPSALQFN 995


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 845,080
Number of Sequences: 5004
Number of extensions: 14244
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)