Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7k07
         (186 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0406 - 17688069-17690643,17691065-17691132                       29   0.40 
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478...    26   3.7  
01_06_1268 - 35878520-35879353,35879920-35880332,35881109-358815...    26   3.7  
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301...    26   4.9  
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426...    25   6.5  

>10_08_0406 - 17688069-17690643,17691065-17691132
          Length = 880

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 38  PLLGLYFYLITFLYSIIP*TSTAGLWNVILSCNWNVFKEIKSY 166
           P+  +YFY+   L   +    T   W V +  +WN+ + + +Y
Sbjct: 528 PISNVYFYITVLLVLTVIAIETHEFWTVHVFSSWNIVRMVCTY 570


>02_05_0890 -
           32546918-32547088,32547224-32547334,32547705-32547884,
           32547960-32548064,32548333-32548431,32548524-32548679,
           32548772-32548850,32549213-32549278,32549382-32549536,
           32549675-32550034,32550150-32550305,32550779-32550856,
           32551471-32551812
          Length = 685

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 52  IFLFNNVFIFYHPIDVHCWALECNSKL*LECLQGNK 159
           +F F+ V     P DVHC  +E  ++  L CL  NK
Sbjct: 407 VFEFSTVV--NEPSDVHCPVVEMATRSKLSCLSWNK 440


>01_06_1268 -
           35878520-35879353,35879920-35880332,35881109-35881510,
           35881598-35881619
          Length = 556

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 19  AVVICTTTFRIIFLFNNVFIF 81
           AVV+   +FRI F+FN + +F
Sbjct: 415 AVVVQAASFRIFFIFNAIALF 435


>07_03_0968 -
           23027940-23028149,23028800-23029002,23029610-23030138,
           23030342-23030579,23031121-23031168,23031199-23031494
          Length = 507

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 44  LGLYFYLITFLYSIIP*TSTAGLWNVILSCNWNV 145
           LG    L T+    +P  +  G W V+  C+W V
Sbjct: 152 LGAGHVLSTWFIEFVP-AAKRGTWMVVFHCSWTV 184


>06_01_0591 +
           4261483-4261631,4261837-4262007,4262127-4262226,
           4263151-4263315,4263416-4263544,4263758-4263858,
           4264527-4264596,4265080-4265331,4265828-4265897,
           4266281-4266341,4266916-4267003,4267746-4267830,
           4268168-4268234,4268442-4268559,4268843-4268923,
           4269022-4269267,4269670-4269771,4269847-4269914,
           4270040-4270171,4270283-4270430,4270504-4270790,
           4270920-4271067,4271156-4271331,4271407-4271518,
           4271614-4271667,4273134-4273244,4273317-4273478,
           4273627-4273814,4273948-4274137,4274297-4274464,
           4274832-4274912
          Length = 1359

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 73  FIFYHPIDVHCWALE 117
           F+FY+PI   CW L+
Sbjct: 208 FVFYNPIMCFCWILK 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,733,476
Number of Sequences: 37544
Number of extensions: 71193
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)