Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7k05
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626...    27   7.1  
09_02_0154 + 5055946-5058721,5058754-5058770                           27   9.3  
07_03_1145 + 24335746-24336299,24336967-24337105,24337634-243376...    27   9.3  

>03_02_0649 -
           10162202-10162366,10162455-10162533,10162614-10162670,
           10162741-10162847,10163365-10163580,10163690-10163734,
           10164100-10164258,10164714-10164818,10164902-10165084,
           10165490-10165546,10165625-10165720,10166970-10167104,
           10167188-10167262,10167380-10167479,10167682-10167842,
           10167921-10168068,10168706-10169111,10169794-10169860,
           10169953-10170162,10170570-10170711,10170809-10170870,
           10170965-10171037,10171876-10171985,10172087-10172227
          Length = 1032

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 380 EGKGLLQRYPIVSVYGLFHPQSIPAVPSMSSA 285
           + KGLL   PI+ +  L  PQ +P  P +SSA
Sbjct: 794 DDKGLLTTLPIIDLLVLMFPQEVP--PLISSA 823


>09_02_0154 + 5055946-5058721,5058754-5058770
          Length = 930

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 300 RDGWYRLWVEKAIDRDYWVSLEEAFTLKQRGSR 398
           +D  Y ++++    +D W+ L+ AF   ++GSR
Sbjct: 280 QDKKYLIFLDDMWSQDAWILLDRAFVKNKKGSR 312


>07_03_1145 +
           24335746-24336299,24336967-24337105,24337634-24337695,
           24338140-24338278,24338692-24338829
          Length = 343

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 231 RHGQALGXXXXXXXXXQMS*RHRRDGWYRLWVEKAIDRDYWVSLEEAF-TLKQRGSR 398
           R   ALG           + R+R +    +  EK +D + W S  E F  LK+RG R
Sbjct: 165 RSADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLDIELWSSTAECFDALKKRGYR 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,970,983
Number of Sequences: 37544
Number of extensions: 224793
Number of successful extensions: 522
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)