Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7k04
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 30 0.29
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 29 0.67
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 29 0.89
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 28 1.6
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 27 3.6
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar... 26 4.7
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 26 4.7
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.3
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 8.3
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 8.3
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 30.3 bits (65), Expect = 0.29
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +1
Query: 100 IKFELPDNSGESTKYLITLLIKE-IHPSIGEIRKKLQVKHIEEQELIKIREVIALCCNQI 276
+K +L D S T YL K ++ ++ + K K + EL+K+RE +AL
Sbjct: 23 VKQKLGDGSF-GTVYLAQRKEKNGLYETVAVKKLKNSSKPKPKHELLKLRESLALRKISK 81
Query: 277 KKCVVNLLGIFKLEYNQGIFLQESRQCHVERL 372
C+++LL F Y + E C++ +L
Sbjct: 82 HPCLIDLLETFMDPYRNIFLVMEFMDCNLFQL 113
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 29.1 bits (62), Expect = 0.67
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 509 SNVWSIQFTKYIVVTLIESSVLSLDKLLFLFSRCWSIVFNLSMHHSNL 366
S W + F ++I +E + LS +KLL + WS++ N H+ L
Sbjct: 412 STDWQLGF-RHISKRSLEVTKLSKEKLLAYTKKLWSLIVNFEYTHAPL 458
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 28.7 bits (61), Expect = 0.89
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 490 WIDHTFEVLSKLSEV-VYKNDYKENFGMCELWKSELLQILSDLHLAIDEL 636
W+ ++ EV VY+ + K+ CE K+E+ Q+ DL +A +EL
Sbjct: 51 WLRLQMQLDMNAKEVDVYEGELKKTQTFCEAEKTEISQLEQDLLVAQEEL 100
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 1.6
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 106 FELPDNSGESTKYLITLLIKEIHPSIGEIRKKLQVK-HIEEQELIKIREVIALCCNQIKK 282
FEL N E Y+ L ++ P I E+R+ + ++ H E+ + +K++E + + I +
Sbjct: 442 FELEINP-EGPNYINLDLKNKVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVNDLIAE 500
Query: 283 CVVNLLGI 306
L GI
Sbjct: 501 LQDELRGI 508
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +1
Query: 514 LSKLSEVVYKNDY----KENFGMCELWKSELLQILSDLHLAIDEL 636
L K + V+Y + Y K NF + WK ++ IL + HL +D L
Sbjct: 207 LQKKAAVLYASLYRCVGKGNFE--DYWKQSIISILKEYHLTLDFL 249
>SPAC3H5.04 |aar2||U5 snRNP-associated protein
Aar2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 490 WIDHTFEVLSKLSEVVYKNDYKENFGMCELWKSELLQILSDLHLAIDE 633
W D+ L++LS ++G E WK+ L +L LA E
Sbjct: 187 WNDNPISALAELSISFLSYSILSHYGALEHWKNMLSLLLQSYELAETE 234
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = -1
Query: 260 SAITSRILINSCSSMCL----TCNFFRISPILGCISLIKSVIKYF 138
+AI S ++I++ + + L T F+R+ P+ CI I ++ F
Sbjct: 472 NAILSAVIIHAVTDLILPMKQTILFWRLQPLEACIFFISVIVSVF 516
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 103 KFELPDNSGESTKYLITLLIKEIHPSIGEIRKKLQVKHIEEQE 231
KF D+S + L+ L+ + H I E+R + IEE+E
Sbjct: 406 KFLASDHSVPEGQELVNSLLTQCHQLIEELRDEKHQHDIEERE 448
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 115 PDNSGESTKYLITLLIKEIHPSIGEIRK 198
P+ +G+ST ++ LLI+++HP+ G + +
Sbjct: 552 PNGAGKST--MLKLLIEQLHPTSGIVSR 577
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 136 TKYLITLLIKEIHPSIGEIRKKLQVKHIEEQELIKIREVIALC 264
T+ + +L K + I I ++ Q+ H++ Q++I+ R LC
Sbjct: 983 TERIPAMLCKMLELLIALITEREQILHVDIQDIIRTRLAQQLC 1025
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,499
Number of Sequences: 5004
Number of extensions: 52679
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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