Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7j24
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   1.5  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    24   1.6  
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    26   3.4  

>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 305  GIVTSSPWVASVRFSGLVVKVGALTTLKVIVC 210
            G +TSS +   V    ++ KVGAL  LK+++C
Sbjct: 1005 GCITSSKFEGGVCSGEVLDKVGALILLKMLLC 1036


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 23.8 bits (49), Expect(2) = 1.6
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 210 LQSSAGLIVYIARVSARVLCPN-LLDDQSP 124
           + +  GL VY+    ARVL PN +L   SP
Sbjct: 96  ISTMGGLFVYLIAKQARVLDPNQVLSTCSP 125



 Score = 21.8 bits (44), Expect(2) = 1.6
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = -3

Query: 450 IRGSTPVVALIRFIDSLDHQSVTSDPFGHGFAVVSPXXXXXXNSCRL 310
           I  STPV   +R  + L       DP+  G    SP        C L
Sbjct: 36  IEVSTPVSGFLRVREGLYLYENGLDPYSGGVFYQSPLLLILNYCCEL 82


>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 58  KDGVNVDNTYKDRITRHNRSSGRRLVIKEVWAED 159
           KDGVNVDN  K      N+S+G  ++I E   E+
Sbjct: 82  KDGVNVDNVKK----IENKSTGVAMIIVEETGEN 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,490
Number of Sequences: 5004
Number of extensions: 43430
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)