Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7j23
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    28   0.55 
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   0.97 
SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyc...    27   1.3  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    26   2.2  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    25   5.2  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    24   9.0  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 1   KENNTKNVLNNTKRYFLYFENIYRMGFFFSIVKTSIIFG 117
           K N T+ +L   K+Y   F N+Y    F SIV+  +  G
Sbjct: 368 KYNMTEMILPLVKQYDHKFRNLYSPNIFLSIVQALVFCG 406


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 37  KRYFLYFENIYRMGFFFSIVKTSI-IFGAGVYTGV 138
           K  FL F+N+  + F F ++  SI IFG  V  G+
Sbjct: 103 KNIFLQFQNVANLFFLFLVILQSISIFGEQVNPGL 137


>SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 150

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 207 GYGKKEMIEKVEDPKALFEKAQAFVKSKLSEVQ 305
           GYG+K M++ +E  K  F  ++ FV S     Q
Sbjct: 89  GYGRKLMLQALETSKQEFSSSKTFVLSSQEYAQ 121


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
 Frame = +1

Query: 1   KENNTKNVLNNTKRYFLYFENI----------YRMGFFFSIVKTSIIFGAG-VYTGVYVA 147
           ++NN  N+L N  +YF++ +NI            +  + SI+  +I    G +  G+ + 
Sbjct: 121 QQNNILNMLVNLMKYFVHMDNISPVTTNGSLKESLRKYSSIIAVNIFSETGDLKKGIAIF 180

Query: 148 QNYQDAVQVICQKSVQNC 201
           Q+  DA Q +  + + NC
Sbjct: 181 QDLSDAEQAV--QYLSNC 196


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -1

Query: 435 FYSLNCIYYTIIVKLIINMYKQLITILFHNSCSHFPNFNL 316
           FYS   +Y T ++  I+N+   ++ +   N      N +L
Sbjct: 101 FYSSTLLYLTALILFIVNVAPSMLVVKLQNYVQFPRNMHL 140


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 441 FXFYSLNCIYYTIIV 397
           F +YSLN IY+ +IV
Sbjct: 393 FDYYSLNSIYFQMIV 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,356,826
Number of Sequences: 5004
Number of extensions: 22982
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)