Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7j16
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ...    54   2e-08
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    30   0.30 
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   6.5  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   6.5  

>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 323

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +1

Query: 370 DNPKMISYKDTVKATSVIKEHIAKTP-LNRSKCCVQFNMELYYKFETVHRTGSFLERAAL 546
           DN  + +Y D   A+  IK+   KTP L  S    +F  E+++K E   + G+F  R AL
Sbjct: 3   DNLVLPTYDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGAL 62

Query: 547 YSLSMLDDEQRAAGVITAS 603
            +LS L++ QR AGV+T S
Sbjct: 63  NALSQLNEAQRKAGVLTFS 81


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 460 KCCVQFN-MELYYKFETVHRTGSFLERAALYSLS 558
           K  +QF  ++++Y FET   T S LER   Y +S
Sbjct: 871 KYLIQFEWLDMFYSFETTRTTDSDLERLITYGVS 904


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 487 LYYKFETVHRTGSFLERAALYSLSMLDDEQRAAGVIT 597
           LY   +T   T    +   L+SL  LD EQRA+ VIT
Sbjct: 249 LYSPEQTSTVTLPLRKDTVLFSLVTLDLEQRASAVIT 285


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 267 RHCIVFVIEYNISLTLSKEYFSNY 196
           RHC   ++ +  + T+SK YFS +
Sbjct: 20  RHCAARLVAFVNNTTISKPYFSTF 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,490
Number of Sequences: 5004
Number of extensions: 48282
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)