Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7j16
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0753 - 27797298-27797547,27797765-27797951,27798040-277981...    38   0.006
03_01_0487 - 3704763-3705416                                           28   5.0  
03_02_0675 - 10333083-10333740,10334910-10335039,10335218-10335350     28   6.7  
12_02_1177 - 26708215-26708309,26708355-26708392,26708476-267095...    27   8.8  

>04_04_0753 -
           27797298-27797547,27797765-27797951,27798040-27798113,
           27798719-27798949,27799047-27799133,27799244-27799434
          Length = 339

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +1

Query: 406 KATSVIKEHIAKTP-LNRSKCCVQFNMELYYKFETVHRTGSFLERAALYSLSMLDDEQRA 582
           +A + I  ++ KTP L+ +        +L++K E   + G+F  R A  S+  LDD++ +
Sbjct: 26  EAQARIAPYVHKTPVLSSTSIDAIVGKQLFFKCECFQKAGAFKIRGASNSIFALDDDEAS 85

Query: 583 AGVITAS 603
            GV+T S
Sbjct: 86  KGVVTHS 92


>03_01_0487 - 3704763-3705416
          Length = 217

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 200 LEKYSLDNVKEILYSITNTIQCL 268
           L+ + L NVKEI Y +T+ I+CL
Sbjct: 5   LQAFKLLNVKEIGYKLTHQIKCL 27


>03_02_0675 - 10333083-10333740,10334910-10335039,10335218-10335350
          Length = 306

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 328 CPKTNVEDDPWCDPDNPKMISYKDT 402
           C K NV+  PW   ++ K+++Y  T
Sbjct: 7   CDKANVKKGPWTAEEDAKLLAYTST 31


>12_02_1177 -
           26708215-26708309,26708355-26708392,26708476-26709563,
           26709826-26709945,26710018-26710098,26710696-26710812,
           26711122-26711904
          Length = 773

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 334 KTNVEDDPWCDPDNPKMISYKDTVKATSVIKEHIAKTPLNRSKCCVQ 474
           K+  E  PW +P  PK  +   T +    +  HI+ T  N  KC ++
Sbjct: 459 KSPPEQIPWTNPLEPKEGASTSTEEEEKNMCRHISYTTSNEVKCKIR 505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,080,935
Number of Sequences: 37544
Number of extensions: 253722
Number of successful extensions: 542
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)