Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7j07
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    36   0.006
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    29   0.84 
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.9  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    26   4.5  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   4.5  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    25   7.8  

>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 345 GD*RLDNMLNRGIPAKTITELCGIAGSG 428
           GD +LD  L+ GIP   +TE+CG +GSG
Sbjct: 78  GDVKLDETLHGGIPVGQLTEICGESGSG 105


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 15/65 (23%), Positives = 33/65 (50%)
 Frame = +1

Query: 217 QSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINV*IICSIEESQLRR 396
           QS    +LD  ++ + K S  CK +    +E+R+ ++T   + +     + S EE  L+ 
Sbjct: 183 QSDYSELLDNYKKQLNKASESCKGNYQACIESRSTLITSLESLIEEQKKLLSEEEESLKS 242

Query: 397 LQNYV 411
           +++ +
Sbjct: 243 VESII 247


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 632 FTNEFNNDKPSLLSSPRY*NIREGKESMTSNTKLSITNSPFFRFLN 495
           FT E NN+ P    +P    I    + M    + S+   PFFR ++
Sbjct: 293 FTKEINNNFPDRSETPTLQTIEAPTKLMKYTRRKSLFRFPFFRSIS 338


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 538 PNYLLLILHSSGF*TSSPVLPLSKYSLC 455
           P+ ++L+LH+SG      V+PL+  +LC
Sbjct: 160 PDDVMLVLHTSGTTGRPKVVPLTHKNLC 187


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +1

Query: 565 SLMFQYLGEDNKLGLSLLNSFVNYSRF 645
           +++ +YLGE N   +++++SFV++  F
Sbjct: 748 AVLGEYLGEGNDENIAIMHSFVDHMSF 774


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 493 SSPVLPLSKYSLCEFYSLWLQLPE 422
           S+P   LS  SL E+ S W + PE
Sbjct: 44  SAPSFILSGTSLLEYMSYWFEFPE 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,392
Number of Sequences: 5004
Number of extensions: 57319
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)