Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7j07
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    28   6.2  
01_01_0949 + 7456938-7457221,7457826-7458030,7458501-7458547,745...    28   6.2  
01_06_0301 + 28315919-28316987,28317059-28317743,28317751-28318246     28   8.1  

>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/71 (25%), Positives = 37/71 (52%)
 Frame = +1

Query: 217  QSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINV*IICSIEESQLRR 396
            + R + +L+    D+EK+    + ++  +  +R + LTK +  V     + S+ ES L  
Sbjct: 2326 EERELEVLENKSNDLEKMLQEKEFALKSLEVSRTKALTKLATTVDKFDELHSLSESLLAE 2385

Query: 397  LQNYVE*QAQE 429
            ++N ++ Q QE
Sbjct: 2386 VEN-LQSQLQE 2395


>01_01_0949 +
           7456938-7457221,7457826-7458030,7458501-7458547,
           7458643-7458796
          Length = 229

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 445 SLWLQLPEP---AIPHNSVIVLAGIPLLSILSKR*SPAQKTSLIFDS 314
           SLWLQLP P   A  HN V  L G    S+L K+   A + S++  S
Sbjct: 4   SLWLQLPAPPASAAVHNPVF-LTGNLSSSLLCKKHPQAARGSILCSS 49


>01_06_0301 + 28315919-28316987,28317059-28317743,28317751-28318246
          Length = 749

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 386 WDSSIEHII*TLITGAENFVNIRFLASKICGMLSLH 279
           W  + +HI+  L  G++   N R L  K+C +L+ H
Sbjct: 195 WQEAADHIVSVLNGGSDVSDNNRALLLKLCDLLAKH 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,993,939
Number of Sequences: 37544
Number of extensions: 310045
Number of successful extensions: 535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)