Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7j05
         (264 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   1.3  
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    25   1.7  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   2.3  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   2.3  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         24   3.0  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    24   3.0  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    24   4.0  
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    24   4.0  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    24   4.0  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    23   5.3  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    23   7.0  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    23   7.0  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    23   7.0  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    23   7.0  
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy...    23   9.2  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    23   9.2  
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    23   9.2  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    23   9.2  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +1

Query: 52  LRGP*IMLTSVCLGLSEIISKKTDSNFQLEYHQT--KH-SIYRLAGVNSIFVS 201
           ++GP      +C G   II ++ + N Q+E  +T  +H  I+ L G+ ++ ++
Sbjct: 752 VKGPDNRYVLICKGADSIIFERLEPNEQVELRKTTSEHLRIFALEGLRTLCIA 804


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 216 CCNIHKCIKGN 248
           CCN+  C+KGN
Sbjct: 113 CCNVPVCVKGN 123


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 186 FHFCVCIYIICCNIHKCIKGNGGK 257
           FH  V +  + C + KC K N GK
Sbjct: 221 FHLIVLVVCMICLLAKCPKFNTGK 244


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 140 NITRQNIVFTGWLVLIPF-LCLH 205
           +I R  + + GW  ++PF LC H
Sbjct: 388 DIIRNEVAYAGWSEVMPFILCSH 410


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 97  SEIISKKTDSNFQLEYHQTKHSIYRLAGVNSIFVSAF 207
           S+ I K    NF+L   Q++HSI  ++  +   + AF
Sbjct: 181 SQAIFKDRSINFELAISQSQHSIRAMSAADIDTLHAF 217


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 107 FRKKQTLTFSWNITRQNIVFTGW 175
           FR   T TFS ++T  + VF GW
Sbjct: 490 FRVPVTDTFSLDVTNVDDVFYGW 512


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +1

Query: 121 DSNFQLEYHQTKHSIYRLAGVNSIFVSAFISYAVIYINVLKVME 252
           DS  + EYH+ +  +   A +  I      + A+I +  LK+ +
Sbjct: 799 DSKHRAEYHEFRKKLNLRAQIKDISTKITNTEAIIQLRELKIRQ 842


>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 121 LFFSKLFPTVLNRQTSTLFMVLVNSSSKQQLLY 23
           L  SKLF ++  ++   + MV ++++ K  +LY
Sbjct: 3   LSISKLFQSLFGKREMRILMVGLDAAGKTTILY 35


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 189 HFCVCIYIICCNIHKCIKGNGGK 257
           H CV   ++  N+++ IK NG K
Sbjct: 773 HLCVATELLGKNLYELIKSNGFK 795


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 131 KLESVFFEIISDSPKQTDVNIIYGP 57
           K+  +FFE    +PK   VN +Y P
Sbjct: 233 KIMDIFFENYQPTPKSPLVNPLYYP 257


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 177 WC*FHFCVCIYIICCNIHKCI 239
           WC  +F V + I C  IH+ +
Sbjct: 697 WCAINFPVVLCIDCSGIHRSL 717


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 146 TRQNIVFTGWLVLIPFLCLHLYHM 217
           TR  + F  W VL+P +  H++++
Sbjct: 93  TRVLLTFFCWTVLLPLIFKHVWNL 116


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 131 KLESVFFEIISDSPKQT 81
           +LES+F E+ ++ PKQT
Sbjct: 221 ELESLFAELPTEPPKQT 237


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   LQRFSQLYKSCCLLEEFTRTINNV 74
           + R S++YK+C   ++    +NN+
Sbjct: 75  ISRMSRIYKNCYATKQMISQLNNL 98


>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 256

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 103 IISKKT-DSNFQLEYHQTKHSIYRLAGVNSIFVSAFISYAV 222
           +I +KT      L+Y  T H  Y  AG N   +S F S  V
Sbjct: 44  VIKEKTAKKEIDLQYILTTHHHYDHAGGNEDILSYFPSLKV 84


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 166 YRLAGVNSIFVSAFISYAVIYINVL 240
           YR+ GVN  F    I   + Y+ VL
Sbjct: 395 YRMVGVNKFFDREEIRDLIAYLRVL 419


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -3

Query: 175 PAGKYYVLSGDIPAES*SLFFSKLFPTV 92
           PAG  Y  +G IP E   L    L P V
Sbjct: 138 PAGPVYSRAGQIPVEDDILLTHTLEPQV 165


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 191 MELTPASR*ILCFVW 147
           + LT ASR ILC VW
Sbjct: 736 LNLTCASRVILCDVW 750


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,076,713
Number of Sequences: 5004
Number of extensions: 18913
Number of successful extensions: 62
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)