Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7i16
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    29   0.37 
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    28   1.1  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    27   2.0  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    26   3.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   8.1  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   8.1  
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    25   8.1  

>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 421 SQPRPVLP---RSKCQRTNATESSGRRHSRRTSV 513
           S P P  P   +S C +TN  ESS  RHS++ S+
Sbjct: 71  SYPLPSAPPNFKSVCTKTNHPESSSSRHSKKKSM 104


>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 143 PSILINLFIFTVIL-KYM*FSNHN**KKILFDVGMNG 36
           P++L+ +F+  + L KY+ F+N +   ++LF +G  G
Sbjct: 72  PAVLLPVFVINIALFKYLVFANFSTKDRVLFGLGNGG 108


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -2

Query: 485 PELSVALVRWHLLRGRTGRGCDAHGGPTLGLVAAPVHQQGFSLIHVT 345
           P +++  +   LL+      C +   PT+G    P H +G+S   +T
Sbjct: 325 PNVAMKYILRKLLKVLDASMCHSKAAPTIGYNIKPKHAEGYSSNEIT 371


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 228 DVRQAVLSSASLRPRIQEALERINFRFHRTCSFSNIIRDC 347
           DV  + L   ++  +  ++  ++N   H T  + NI RDC
Sbjct: 309 DVLHSALGLYAMAYQDDKSFPKVNADIHMTSKYINICRDC 348


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = -3

Query: 559 SSTSFTGEAIPEIILQLM--SVCCDDDRSSLSRWCAGTC 449
           S    T   I E+  +L   SVC D    S S W  GTC
Sbjct: 178 SKLDMTSRMIVELKNRLYECSVCTDTINPSTSIWSCGTC 216


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +3

Query: 315 TCSFSNIIRDCYVNEAETLLMYRGCDESESRATMSVTASTCSSTQQVPAHQRDRELRSSS 494
           T  F ++ R+  +   +T+L  +  +       MS+     S   ++  H+ +R    S+
Sbjct: 490 TIPFDSLSRNLSLT-VQTVLYLKNRNFQTGNEVMSILGPCLSFLMKLSTHKNERIACLSA 548

Query: 495 QQTDISCRIISG--IASPVNEVEEQRLL 572
            Q    C I S   +  PV E+ ++ L+
Sbjct: 549 SQLITVCHIFSDTTLIKPVKELFQKYLV 576


>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 451 KCQRTNATESSGRRHSRRTSV 513
           + QRT ATE+ GR H+   SV
Sbjct: 217 RVQRTPATETKGRVHTSTASV 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,316
Number of Sequences: 5004
Number of extensions: 47714
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)