Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7i14
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 119 3e-28
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 45 1e-05
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 33 0.050
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 31 0.12
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 27 2.5
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 3.3
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 7.6
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 25 7.6
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 25 10.0
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 25 10.0
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 10.0
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 119 bits (287), Expect = 3e-28
Identities = 68/178 (38%), Positives = 100/178 (56%), Gaps = 4/178 (2%)
Frame = +2
Query: 98 WKPEQEGLRQILTLLKESQSPDTATQRAVQQKLEELNKYPDFNNYLIFVLTRLVTEEEPT 277
W +++ L ++ ++K S S ++ T+ A LE+ PD NNYL +L
Sbjct: 6 WVLQEQVLVELSEVIKNSLSENSQTRNAALNLLEKAKDIPDLNNYLTCILINATELSVSI 65
Query: 278 RSLSGLILKNNVKA---HYNSFLPEVAEFIKQECLSAVGDPSPLIRATVGIIITTIASKG 448
RS +GL+LKNNV+ S L + ++ K + + DP LIR G +ITTI S+
Sbjct: 66 RSAAGLLLKNNVRVSSLESGSGLQSL-DYTKSTVIRGLCDPEQLIRGISGNVITTIISRW 124
Query: 449 ELTSWPELLPSLCQMLDSQDYNVCEGAFGALQKICEDTAELLDSDAM-NRPLNVLIPK 619
+++WPE+LP L +ML S EGAF AL KICED+A+ LD D RPL+ +IP+
Sbjct: 125 GISTWPEVLPQLMEMLSSPASTTQEGAFSALTKICEDSAQELDRDFNGTRPLDFMIPR 182
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 44.8 bits (101), Expect = 1e-05
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Frame = +2
Query: 128 ILTLLKESQSPDTATQRAVQQKLEELNKYPDFNNYLIFVLTRLVTEEEPTRSLSGLILKN 307
I TLL + +P T+ K+ EL F L+ ++ T + + + L KN
Sbjct: 4 IPTLLARTLNPTTSKSAEEALKVWELQD-SSFALKLLNIVAE-DTVDINIKLAASLYFKN 61
Query: 308 NVKAHYNS-------FLPEVAEFIKQECLSAVGDPSPLIRATVGIIITTIASKGELTSWP 466
+K H++S EVAE IK+E ++ + + +I+ +G +I IA+ W
Sbjct: 62 YIKKHWDSEEGASIRISDEVAELIKREIINLMLKSTTIIQVQLGEVIGYIANFDFPDRWD 121
Query: 467 ELLPSLCQMLDSQDYNVCEGAFGALQKICEDTAELLDSDAM 589
LLP L L + D N I + L SDA+
Sbjct: 122 TLLPDLISKLSAVDMNTNIAVLSTAHAIFKRWRPLFRSDAL 162
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 32.7 bits (71), Expect = 0.050
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Frame = +2
Query: 155 SPDTATQRAVQQKLEELNKYPDFNNYLIFVLTRLVTEEEPTRSLSGLILKN----NVKAH 322
S D A + +N YP L+ + TRL P RS+ L+L+ +
Sbjct: 186 SLDYIFMSAASKVFAAVNMYP-----LLVIRTRLQVMRSPHRSIMNLVLQTWRLQGILGF 240
Query: 323 YNSFLPEVAEFIKQECLSAVGDPSPLIRATVGIIITTIASKGE 451
Y FLP + + Q C++ L+ VG+ T +SK +
Sbjct: 241 YKGFLPHLLRVVPQTCITF------LVYEQVGMHFKTQSSKSQ 277
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 31.5 bits (68), Expect = 0.12
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +2
Query: 278 RSLSGLILKNNVKAHYNSFLPEVAEFIKQECLSAVGDPSPLIRATVGIIITTIASKGELT 457
R+ +I + N K S LPE +FI+ L L+ ++++ IA T
Sbjct: 63 RNSIDIIWRKNTKM---SLLPEERDFIRCNALLGSIKSENLLSIQNALVVSRIARLDYPT 119
Query: 458 SWP----ELLPSLCQMLDSQDYNV 517
WP +LL L Q L + DY+V
Sbjct: 120 EWPSLFHDLLGKLQQSLGTGDYDV 143
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 100 ETRTRRITANFNTTQRVTVTRHSYTTSSSTKIGRTEQIPGLQQLSD 237
+TR R A + T S+TT+++T R+ + GL + SD
Sbjct: 148 QTRATRKPAQPKAEKSTTSKSKSHTTTATTHTSRSSKSKGLPRFSD 193
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 482 LCQMLDSQDYNVCEGA-FGALQKICED 559
LC ++D DY C GA + Q +C D
Sbjct: 898 LCPIIDGVDYLSCNGACYNPSQYVCSD 924
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.4 bits (53), Expect = 7.6
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 386 DPSPLIRATVGIIITTIASKGELTSWPELLPSLCQMLDSQDYNV-CEGAFGALQKI 550
DP P RAT + ++ K +P L+P L +L S+ V +GA L +I
Sbjct: 1652 DPVPDTRATAAKALGSLIEKLGEKKFPTLIPELFNVLRSECSEVDRQGAAQGLSEI 1707
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/50 (20%), Positives = 26/50 (52%)
Frame = -3
Query: 177 RCVAVSGDCDSLSSVKICRNPSCSGFHSIFIIKSRKRLITRYSKDQPCQN 28
+C+A+S + +S+++C P SG ++ ++ + ++ D C +
Sbjct: 176 QCLAISISYSTATSIQLCLPPEYSGNSNVSLLSLMEADREQHISDYKCDS 225
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 10.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 100 PLHFHNKIQKTVNHSV 53
PLHF N+IQ+ H++
Sbjct: 433 PLHFVNRIQRVCKHTI 448
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +2
Query: 125 QILTLLKESQSPDTATQRAVQ 187
+IL+LLK+ ++PD TQ+ ++
Sbjct: 264 KILSLLKKEEAPDELTQKLLE 284
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 125 QILTLLKESQSPDTATQRAVQQKLEE 202
+I+TL + QSP+ AT++ LEE
Sbjct: 370 EIITLDENDQSPNEATEKLRDNDLEE 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,626
Number of Sequences: 5004
Number of extensions: 52217
Number of successful extensions: 188
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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