Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7i05
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   2.8  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   3.6  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   8.4  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    25   8.4  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 327 NSALTEKILCTLKYVFFFKKSLPIS*YIPKLGFVFLFSII 208
           N  L   I     Y FFF    P+S Y P L F F  +I+
Sbjct: 163 NLLLLPPIFHFYSYPFFFVDHPPLSSYSPFLWFYFFITIV 202


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 305 FCAHLNMYFFSKNLFQFLDIYL 240
           F   L  Y F  N+FQF++IY+
Sbjct: 780 FVNDLVFYLFRNNMFQFIEIYV 801


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 251 QEIGRDFLKKNTYLSVHRIFSVNAEFAAK 337
           Q + RDFLK   +LSV R+ S +     K
Sbjct: 379 QLLARDFLKDYVFLSVGRVGSTSENITQK 407


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 579 KVDVIVLNSKSVTLVYCLIITVGALAFSIFXKGIHKNIY 695
           +VD++++ ++ V     LI  +G    ++F K  HK  Y
Sbjct: 203 RVDLVLVGAEGVVENGGLINQIGTFQLAVFAKHAHKPFY 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,575
Number of Sequences: 5004
Number of extensions: 62622
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)