Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7h19
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    28   1.3  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    27   1.7  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   2.3  
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |...    27   3.0  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   4.0  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    26   5.3  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   7.0  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   7.0  

>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 409 STQIEGEPE--LGCLEYVSTYNFSNLDVGFMKNKSLYIAIAFPSP 537
           + +I+G PE  LGC  Y++  N +NL V     K  Y+A  +  P
Sbjct: 366 AAKIDGVPEYALGCHNYLNLPNIANLLVNPRTGKHGYVAKFYLEP 410


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = -1

Query: 638 SDTKVKSASSKFLSNPSKV*TVNNLSKTFRFSIFGLGNAMAMYRDLFFMNPTSRLEKLYV 459
           S+ K  +A     + PSKV  VN+LS       F   N  +MYR +   NP   ++  ++
Sbjct: 364 SERKAYAADDSIDNTPSKVPIVNSLSDPRTNRPFFYSNPDSMYRSI--SNPLHLVDSQHL 421

Query: 458 LTYSKQPSSGSP 423
              +++    +P
Sbjct: 422 SPLNRKTHFNNP 433


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 472 RNCMCLHILSNLALVH-LQFVWNDCFLW 392
           RN   LH  S    VH L  +W++CFL+
Sbjct: 351 RNLKNLHYNSKKEFVHDLMLIWSNCFLY 378


>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 190

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +1

Query: 160 PNYYDIGGTYYLEDLPDFWFTSKTEQVGDIFLLHIFIQRYCEGSFSISISHGSEMEIDKK 339
           P + D      + D  + +     E +  I  L   I++  +GS +    +    + D  
Sbjct: 15  PKFLDASVLRQIPDNQEVFLQDSKENLTVIIELLEKIEKPFDGSVAAYHFNSIAFDNDAS 74

Query: 340 QKIVRLTKSLKEYKFENTR-ENSHSTQIEG 426
           Q+++   KSL E  FE  R E +  + ++G
Sbjct: 75  QRVIWRDKSLGEDDFEGMRSEKASGSSVQG 104


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 455 TYSKQPSSGSPSICVE*LFSLVFSNLYSFS 366
           +YS++P   SPS  ++  FS V S L  FS
Sbjct: 403 SYSEEPPQSSPSSTLQYTFSTVRSALSGFS 432


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +1

Query: 319 EMEIDKKQKIVRLTKSLKEYKFENTRENSHSTQIEGEPELGCLEYVSTYNFSNLDVGFMK 498
           E  I K+++I R T +  +YK       +HS  ++G     CLE  +  ++  + V F  
Sbjct: 261 EESIPKEERIPRFTAASWKYKSGAVGILAHSIILQGTNYDTCLELQADGHYVRM-VDFYG 319

Query: 499 NKSLYI 516
              LYI
Sbjct: 320 QPRLYI 325


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = -2

Query: 145 DKHFQYRAILHRMFYKNDGPKLYLYFLL*EYQKTTFGLRYLIAPFS 8
           DK+  Y  + HR+  + + PK+++   L +YQ    GL ++++ ++
Sbjct: 842 DKNLDYFKVAHRIHEEVEQPKIFVGGTLKDYQLK--GLEWMLSLYN 885


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 325 EIDKKQKIVRLTKSLKEYKFENTRENSHSTQIEGEPELGCLEYVSTYNFSNLDVG 489
           +ID   ++ R  K ++  K +N R ++    +  E      +YV  +NF N  VG
Sbjct: 292 KIDPSYRLERALKHIEVLKLKNYRISADRLSVIRET---LNQYVGVHNFHNFTVG 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,837
Number of Sequences: 5004
Number of extensions: 63764
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)