Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7h18
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    30   0.26 
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    30   0.34 
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    29   0.78 
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    28   1.0  
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    27   2.4  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    26   4.2  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   7.3  

>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 419 PPRTPEERDVCRDLYSTSV 475
           PP+TPE++ +C D +ST +
Sbjct: 89  PPKTPEDQKLCNDFFSTRI 107


>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 152 SYCGARMCGQTNVHTFCQYPEGPSSK 229
           +YC  + C +  VH   QY +GP SK
Sbjct: 10  TYCPGKNCRKHTVHRVTQYKKGPDSK 35


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 201 ASTLRVPVQNAWDTLRRHSLRKRGLDFWPDS 293
           ++ L  P+QN     R+H LR + +DFWP S
Sbjct: 391 STILHAPLQNLLKP-RKHRLRVQVVDFWPKS 420


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 637 EDLCKVSIKTAGTLRRNVISNVSSIIPALHVPQVDHGLHVET 512
           ED  ++  K  G+L +  I+N+SSII  + V  +++  H  T
Sbjct: 256 EDALRLRRKLQGSLNKLSIANISSIIKEIEVLYMENSRHSVT 297


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 239 IPCILNWDPQGTGKMYVHSFART 171
           + C+LN+D     K Y+H   RT
Sbjct: 395 VACVLNFDMPSNTKSYIHRIGRT 417


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 631 LCKVSIKTAGTLRRNVISNVSSIIPALHVPQVD 533
           LC V  K+  +   N+I+N+   +PALH P ++
Sbjct: 224 LCGVLDKSGPSKLDNLIANLRKNLPALHKPLLE 256


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +2

Query: 359 KLRWVEELAREAQRWADQCRPPRTPEERDVCRDLYST 469
           K R +  L+       D C  P   E  D C++ Y T
Sbjct: 297 KKRRLSSLSTNNNHLCDNCHKPVNCEVEDTCKEAYCT 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,657
Number of Sequences: 5004
Number of extensions: 58904
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)