Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7h16
(510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 29 0.53
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 2.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 3.8
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5... 25 5.0
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 5.0
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 6.6
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 6.6
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 25 6.6
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 25 6.6
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 25 8.7
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 28.7 bits (61), Expect = 0.53
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 314 AVVLQYSSREINSALCVWRCPPQQNGSQFLFRVSMS-DGRT 195
+++ +YSSR +NS C P+ S F +++ S DG T
Sbjct: 363 SIIYEYSSRHLNSGFCKTYKDPRLRISSFYVKLACSPDGAT 403
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 282 YFTGTVLKNYSTFW-SNLIAEAPQDAA 359
Y G+++KN TFW N + + QD A
Sbjct: 612 YDEGSIIKNCKTFWKQNFLNDGRQDEA 638
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 3.8
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +3
Query: 69 YEQVTIEGAETFKGFFLQARSIDTDQWIGTWENAPNTTIHPECSSITHADPKEKLRAVLL 248
Y +++ + T+ + S D+ + GT + P TTI E SSI + P +V
Sbjct: 677 YTSSSVDSSSTYNS--TGSSSSDSQSFSGTTYSDPTTTITSEVSSIL-SSPTSMQSSVSR 733
Query: 249 WRAPPDAQG 275
++ DA G
Sbjct: 734 PQSSGDASG 742
>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
Whi5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 252
Score = 25.4 bits (53), Expect = 5.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 405 THSNCVSAFSPIFGVVLHLEAP 340
+H++ SA SP+FG+ H+ P
Sbjct: 177 SHASTASAKSPLFGMNYHISRP 198
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 359 CCILR--RLCYEIRPKRAVVLQYSSREINSALCVWRCP 252
C ++R +LC E+ P + + I +CV +CP
Sbjct: 29 CPVVRTGKLCIEVNPTDRIAFISETLCIGCGICVKKCP 66
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.0 bits (52), Expect = 6.6
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Frame = +3
Query: 33 VLRYTRKFKNLRYEQVTIEGAETFKGFFLQARSIDTDQWIGTWENAPNTTIH-PECSSIT 209
+L+Y F+ L+Y +T E E + + DQ +A + I + SS+
Sbjct: 119 ILKYFDSFEILKYNPLTDETREVYDYILSFIQQYLGDQSPEILRSAADLIIELLKDSSLD 178
Query: 210 HADPKEKLRAVLLWRAPPDAQGRVYFTGTVLKNYS 314
K+++ VL P D ++ G L +Y+
Sbjct: 179 EQGRKKQIEEVLSTELPQDRFSQLVNLGNRLTDYT 213
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.0 bits (52), Expect = 6.6
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 258 PPDAQGRVYFTGTVLKNYSTFWSNLIAEAPQDAAQLQILG*TQTHNLNE 404
P + T VLK S+F S+ + P++ +L G +HN +E
Sbjct: 558 PSSTSSYIDTTNNVLKTNSSFKSSGLTSGPRNEKELLPEGIPTSHNNSE 606
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 124 PAPSTLISGSAPGKTHLIRRYILNV 198
PAP+ +SG+ PG T Y+ V
Sbjct: 353 PAPTLSVSGTTPGMTGSTSEYVTPV 377
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 6.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 112 SFYKPAPSTLISGSAPGKTHLIRRYILNVRPSLMLT 219
SF+ P+ ++SG++ G H+I +R S +T
Sbjct: 171 SFFHPSGEYILSGTSKGWFHVIDASTTKIRSSHRIT 206
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 255 APPDAQGRVYFTGTVLKNYSTFWSNLIAEAPQD 353
APP+ + V+ G++L + STF I++ D
Sbjct: 331 APPERKYSVWIGGSILASLSTFQQMWISKQEYD 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,246
Number of Sequences: 5004
Number of extensions: 45113
Number of successful extensions: 93
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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