Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7h16
(510 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.45
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.45
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.45
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.45
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 1.4
AB023025-1|BAA74592.1| 133|Apis mellifera actin protein. 23 1.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.4
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 21 5.6
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 9.8
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 9.8
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 21 9.8
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.45
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 237 AVLLWRAPPDAQGRVYFTGTVLKNYSTFWSNLIAEA-PQDAAQLQILG 377
A+L + PPD+ ++ T+L + + F NL+AE PQ + + +LG
Sbjct: 212 ALLGFTLPPDSGEKLTLGVTILLSLTVF-LNLVAETLPQVSDAIPLLG 258
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.45
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 237 AVLLWRAPPDAQGRVYFTGTVLKNYSTFWSNLIAEA-PQDAAQLQILG 377
A+L + PPD+ ++ T+L + + F NL+AE PQ + + +LG
Sbjct: 212 ALLGFTLPPDSGEKLTLGVTILLSLTVF-LNLVAETLPQVSDAIPLLG 258
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.45
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 237 AVLLWRAPPDAQGRVYFTGTVLKNYSTFWSNLIAEA-PQDAAQLQILG 377
A+L + PPD+ ++ T+L + + F NL+AE PQ + + +LG
Sbjct: 212 ALLGFTLPPDSGEKLTLGVTILLSLTVF-LNLVAETLPQVSDAIPLLG 258
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.45
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 237 AVLLWRAPPDAQGRVYFTGTVLKNYSTFWSNLIAEA-PQDAAQLQILG 377
A+L + PPD+ ++ T+L + + F NL+AE PQ + + +LG
Sbjct: 280 ALLGFTLPPDSGEKLTLGVTILLSLTVF-LNLVAETLPQVSDAIPLLG 326
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.4 bits (48), Expect = 1.4
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 237 AVLLWRAPPDAQGRVYFTGTVLKNYSTFWSNLIAEA-PQDAAQLQILG 377
AVL + PPD+ ++ T+L + + F N++AE P + + +LG
Sbjct: 249 AVLGFTLPPDSGEKLSLGVTILLSLTVF-LNMVAETMPATSDAVPLLG 295
>AB023025-1|BAA74592.1| 133|Apis mellifera actin protein.
Length = 133
Score = 23.4 bits (48), Expect = 1.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 255 APPDAQGRVYFTGTVLKNYSTF 320
APP+ + V+ G++L + STF
Sbjct: 106 APPEKKYSVWIGGSILASLSTF 127
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.4
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 237 AVLLWRAPPDAQGRVYFTGTVLKNYSTFWSNLIAEA-PQDAAQLQILG 377
A+L + PPD+ ++ T+L + + F NL+AE+ P + + ++G
Sbjct: 212 ALLGFTLPPDSGEKLTLGVTILLSLTVF-LNLVAESMPTTSDAVPLIG 258
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.4
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 237 AVLLWRAPPDAQGRVYFTGTVLKNYSTFWSNLIAEA-PQDAAQLQILG 377
A+L + PPD+ ++ T+L + + F NL+AE+ P + + ++G
Sbjct: 212 ALLGFTLPPDSGEKLTLGVTILLSLTVF-LNLVAESMPTTSDAVPLIG 258
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.4
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 237 AVLLWRAPPDAQGRVYFTGTVLKNYSTFWSNLIAEA-PQDAAQLQILG 377
A+L + PPD+ ++ T+L + + F NL+AE+ P + + ++G
Sbjct: 212 ALLGFTLPPDSGEKLTLGVTILLSLTVF-LNLVAESMPTTSDAVPLIG 258
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 2.4
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 237 AVLLWRAPPDAQGRVYFTGTVLKNYSTFWSNLIAEA-PQDAAQLQILG 377
A+L + PPD+ ++ T+L + + F NL+AE+ P + + ++G
Sbjct: 280 ALLGFTLPPDSGEKLTLGVTILLSLTVF-LNLVAESMPTTSDAVPLIG 326
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.4 bits (43), Expect = 5.6
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +3
Query: 240 VLLWRAPPDAQGRVYFTGTVLKNYSTFWSNLIAEAPQDAAQLQILG 377
VL++ P D+ +V ++L + + F+ L P + + +LG
Sbjct: 268 VLVFYLPSDSGEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPLLG 313
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 20.6 bits (41), Expect = 9.8
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = +3
Query: 237 AVLLWRAPPDAQGRVYFTGTVLKNYSTFWSNLIAEAPQDAAQLQILG 377
+VL++ P D+ +V + ++L + + F+ L P + + +LG
Sbjct: 254 SVLVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLTVPLLG 300
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 20.6 bits (41), Expect = 9.8
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +2
Query: 269 TGQSLFHGNCTEELQHVLV*SHSRGASRCSTTPNI 373
T +SLF TEE+ ++ H + +R P +
Sbjct: 133 TNRSLFIREQTEEMYREMLLEHKKRRARRDIHPEL 167
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 20.6 bits (41), Expect = 9.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -2
Query: 428 KKNIYKIELIQIVCLRSAQYLELCCI 351
++N+YK++L + RSA C+
Sbjct: 672 QRNMYKLDLKNMKYTRSADLSSYNCV 697
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,497
Number of Sequences: 438
Number of extensions: 3061
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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