Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7h15
(621 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89387-1|AAC52056.1| 142|Homo sapiens RNA polymerase II subunit... 34 0.47
U85510-1|AAC80226.1| 142|Homo sapiens RNA polymerase II subunit... 34 0.47
BC093797-1|AAH93797.1| 142|Homo sapiens polymerase (RNA) II (DN... 34 0.47
BC093795-1|AAH93795.1| 142|Homo sapiens polymerase (RNA) II (DN... 34 0.47
BC017205-1|AAH17205.1| 142|Homo sapiens polymerase (RNA) II (DN... 34 0.47
AC012306-1|AAY14877.1| 84|Homo sapiens unknown protein. 33 1.1
EF447434-1|ABO21860.1| 298|Homo sapiens MHC class I antigen pro... 30 5.7
AL359921-11|CAI13775.1| 2144|Homo sapiens protein BAP28 (FLJ1035... 30 5.7
AL359921-10|CAI13776.1| 2063|Homo sapiens protein BAP28 (FLJ1035... 30 5.7
BC081538-1|AAH81538.1| 202|Homo sapiens Unknown (protein for IM... 30 7.6
AF033351-1|AAD01961.1| 181|Homo sapiens MHC class I antigen pro... 30 7.6
>U89387-1|AAC52056.1| 142|Homo sapiens RNA polymerase II subunit
hsRPB4 protein.
Length = 142
Score = 33.9 bits (74), Expect = 0.47
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +3
Query: 276 EAMLGNDKLAKIAKQKQKESNKQDEYEALQSFLRSISSTATLPPYVKGETYSSVRGVFNQ 455
E +L ++ + +KQ+ + +DE E + F+++++ TA + ET +SVR + Q
Sbjct: 30 ETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQ 89
>U85510-1|AAC80226.1| 142|Homo sapiens RNA polymerase II subunit
hsRPB4 protein.
Length = 142
Score = 33.9 bits (74), Expect = 0.47
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +3
Query: 276 EAMLGNDKLAKIAKQKQKESNKQDEYEALQSFLRSISSTATLPPYVKGETYSSVRGVFNQ 455
E +L ++ + +KQ+ + +DE E + F+++++ TA + ET +SVR + Q
Sbjct: 30 ETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQ 89
>BC093797-1|AAH93797.1| 142|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide D protein.
Length = 142
Score = 33.9 bits (74), Expect = 0.47
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +3
Query: 276 EAMLGNDKLAKIAKQKQKESNKQDEYEALQSFLRSISSTATLPPYVKGETYSSVRGVFNQ 455
E +L ++ + +KQ+ + +DE E + F+++++ TA + ET +SVR + Q
Sbjct: 30 ETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQ 89
>BC093795-1|AAH93795.1| 142|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide D protein.
Length = 142
Score = 33.9 bits (74), Expect = 0.47
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +3
Query: 276 EAMLGNDKLAKIAKQKQKESNKQDEYEALQSFLRSISSTATLPPYVKGETYSSVRGVFNQ 455
E +L ++ + +KQ+ + +DE E + F+++++ TA + ET +SVR + Q
Sbjct: 30 ETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQ 89
>BC017205-1|AAH17205.1| 142|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide D protein.
Length = 142
Score = 33.9 bits (74), Expect = 0.47
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +3
Query: 276 EAMLGNDKLAKIAKQKQKESNKQDEYEALQSFLRSISSTATLPPYVKGETYSSVRGVFNQ 455
E +L ++ + +KQ+ + +DE E + F+++++ TA + ET +SVR + Q
Sbjct: 30 ETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQ 89
>AC012306-1|AAY14877.1| 84|Homo sapiens unknown protein.
Length = 84
Score = 32.7 bits (71), Expect = 1.1
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +3
Query: 276 EAMLGNDKLAKIAKQKQKESNKQDEYEALQSFLRSISSTATLPPYVKGETYSSVR 440
E +L ++ + +KQ+ + +DE E + F+++++ TA + ET +SVR
Sbjct: 30 ETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
>EF447434-1|ABO21860.1| 298|Homo sapiens MHC class I antigen
protein.
Length = 298
Score = 30.3 bits (65), Expect = 5.7
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 325 RKNQINRTNTKPYRVSCAVSAQRPHYHHTSKEKHTL 432
R+ QI++TNT+ YRVS + R +Y+ + HTL
Sbjct: 86 RETQISKTNTQTYRVS--LRNLRGYYNQSEAGSHTL 119
>AL359921-11|CAI13775.1| 2144|Homo sapiens protein BAP28 (FLJ10359)
protein.
Length = 2144
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 147 ICKIIPLVKP*NSASISGQSQIIKTTHRLSKLIKDNMKC 263
IC+I V N+ S SQIIKT ++ LIKD + C
Sbjct: 265 ICQISVKVTMENTFVNSLASQIIKTLTKIPSLIKDGLSC 303
>AL359921-10|CAI13776.1| 2063|Homo sapiens protein BAP28 (FLJ10359)
protein.
Length = 2063
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 147 ICKIIPLVKP*NSASISGQSQIIKTTHRLSKLIKDNMKC 263
IC+I V N+ S SQIIKT ++ LIKD + C
Sbjct: 265 ICQISVKVTMENTFVNSLASQIIKTLTKIPSLIKDGLSC 303
>BC081538-1|AAH81538.1| 202|Homo sapiens Unknown (protein for
IMAGE:30530665) protein.
Length = 202
Score = 29.9 bits (64), Expect = 7.6
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 550 FSRCSCGRAIA-EKPIG*PAPAARINTAH 467
FSRCS RAI+ +P P PA R +T H
Sbjct: 156 FSRCSVSRAISGSRPTVMPQPAPRASTPH 184
>AF033351-1|AAD01961.1| 181|Homo sapiens MHC class I antigen
protein.
Length = 181
Score = 29.9 bits (64), Expect = 7.6
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 325 RKNQINRTNTKPYRVSCAVSAQRPHYHHTSKEKHTL 432
R QI++TNT+ YRVS + R +Y+ + HTL
Sbjct: 61 RNTQISKTNTQTYRVS--LRNLRGYYNQSEAGSHTL 94
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,880,582
Number of Sequences: 237096
Number of extensions: 1827472
Number of successful extensions: 5502
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5502
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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