Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7h11
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 36 0.007
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 34 0.015
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 33 0.027
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 30 0.25
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 27 2.3
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 27 2.3
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 5.3
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 26 5.3
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.1
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 7.1
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch... 25 7.1
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 7.1
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 9.3
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 25 9.3
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar... 25 9.3
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +2
Query: 494 VPGLYWSGGDVIHDNGFGCYAQRGRRTPIGAENYHYSHSLPGLLSM 631
+P GGD+ +G G + G R P EN+ SH PGLLSM
Sbjct: 80 IPNFMIQGGDITKGDGTGGKSIYGSRFP--DENFKLSHQRPGLLSM 123
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 34.3 bits (75), Expect = 0.015
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Frame = +3
Query: 345 LGYRPRLNLLRTGRLSIVKLKRIRQCCILMGPL-RRTTLTFLHSELKLPRRSQVC----- 506
L Y P + + I++ KR+R+ C L G L R + + ELKLP + ++C
Sbjct: 473 LRYSPMYLYKKQAWMQIIEKKRVREFCDLFGSLVCRHSKQDVEEELKLPPQHRICMTTRL 532
Query: 507 TGVEET*YTTMAS 545
+ VEET Y + S
Sbjct: 533 SVVEETNYQDLLS 545
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 33.5 bits (73), Expect = 0.027
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +2
Query: 494 VPGLYWSGGDVIHDNGFGCYAQRGRRTPIGAENYHYSHSLPGLLSM 631
+P GGD NG G + G + P EN+ H+ PGLLSM
Sbjct: 55 IPQFMLQGGDFTRGNGTGGKSIYGEKFP--DENFALKHNKPGLLSM 98
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 30.3 bits (65), Expect = 0.25
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 494 VPGLYWSGGDVIHDNGFGCYAQRGRRTPIGAENYHYSHSLPGLLSM 631
+ G GGD + +G G RT EN+ H PGLLSM
Sbjct: 64 IQGFMIQGGDFVSGDGTGSATIFNSRT-FPDENFTLKHDRPGLLSM 108
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 27.1 bits (57), Expect = 2.3
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Frame = +2
Query: 74 IIYNMTLLNAILKKVSSSESLNRKYPSXXXXXXXXKTIKQRKRKHTHKGKVDCNW----L 241
I+ N T + + VSS LNR +T ++ + K T K D +
Sbjct: 52 ILNNETTIGSTKSSVSSLPELNRNVSFEKSDQNLAETKREEENKRTEVFKKDAEHEAVVV 111
Query: 242 KLPVRPKRHDARSHYFKEIRKDNLQLYKRI 331
K RP+R + Y + + ++ +KRI
Sbjct: 112 KRDFRPRRPEQTRPYTYDFLRHQIE-FKRI 140
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 257 PKRHDARSHYFKEIRKDNLQL-YKRIVKAKARVQTTAELIEDWKTKHREIEKDTT 418
P D RS Y ++ + KR+V+ + ++++L ED+K RE+++ T
Sbjct: 210 PNLFDFRSGYIFPFQRVGATVPKKRLVETETPPPSSSKLKEDYKDSKREMKRSNT 264
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 611 ENVSSDSSRLRWASVFPFGRNSRSHCRV 528
+ V D +R+ FP+ RN++S+C V
Sbjct: 94 QKVIVDHPPVRYRVTFPWNRNAKSYCLV 121
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 147 YFLFKDSLEL--TFFNIAFNKVILYIICLNYCTLNFLL 40
Y+ F LE TF + F + +I+CL YC+ F +
Sbjct: 412 YWKFTALLEASATFISYPFQS-LAFIVCLKYCSFYFFI 448
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 392 HREIEKDTTMLYPYGPLAEDHAYISTQRTEA 484
HR++E + + L PY P + + Y+ +A
Sbjct: 437 HRKLESELSHLPPYSPYRDSYFYLEDDDGDA 467
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 215 KGKVDCNWLKLPVRPKRHDARSHYFKEIRKDNLQLYKRIVKAKAR 349
KGK+ + V+ + HD HY+K + + Y +I K++
Sbjct: 855 KGKLSIDHFLNKVQSRWHDEEHHYYKTGFRKRVYKYLKIKDKKSK 899
>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 237
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +2
Query: 458 YISTQRTEATKKVPGLYWSGGDVIHDNGFG 547
Y QR + G+ +GG+ +H N +G
Sbjct: 18 YPGLQRNSIPPNIDGIILAGGESVHPNRYG 47
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +2
Query: 446 EDHAYISTQRTEATKKVPGLYWSGGDVIHDNG-FGCYAQRGR---RTPIGAENYHYSHSL 613
E++ +S+ EA K G + N G + GR RTPIG+ SHS
Sbjct: 103 EENNVVSSDSKEAITKESGAELESSEPASTNSNVGMTTRSGRQSPRTPIGSTTPKSSHSP 162
Query: 614 PGLLSMR 634
P R
Sbjct: 163 PSTRKRR 169
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 92 LLNAILKKVSSSESLNRKYPS 154
L NA++ +SSS +L++ YPS
Sbjct: 184 LFNALISILSSSSTLHKLYPS 204
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 294 KYVKIICSFTNVSSKRKLGY 353
+YVK+ S TN S +RK+ Y
Sbjct: 244 RYVKLYGSTTNTSKRRKVDY 263
>SPAC19D5.06c |din1||Dhp1p-interacting protein
Din1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 197 KRKHTHKGKVDCNWLKLPVRPKRHDARS 280
K K G+VDC W K P K D S
Sbjct: 191 KSKLILAGEVDCIWDKKPCSAKESDVHS 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,462
Number of Sequences: 5004
Number of extensions: 53070
Number of successful extensions: 168
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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