Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7h09
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 3.9
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 26 3.9
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 3.9
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 26 5.1
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 6.8
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 25 6.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 6.8
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 9.0
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 25 9.0
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 26.2 bits (55), Expect = 3.9
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 386 ELVEYSLGLPGASVGKGDKRMRTQSYTSSSLPDLPIPANVPVISNNTTHERRRH 547
E+ E GL VGKGD + S + + LP P+ V N T H R+
Sbjct: 52 EIWETRDGLFEEPVGKGDSHLNHTSVMTGNWNILPYPSFGKVSPNVTWHTTLRN 105
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/48 (25%), Positives = 29/48 (60%)
Frame = +2
Query: 467 SSSLPDLPIPANVPVISNNTTHERRRHSSKVSGIMSGGKKARRKGHLS 610
+SS+P+ P+ + +SN +T E +++ SG+ + +K++ ++S
Sbjct: 242 TSSVPETPVGVSAANVSNEST-ELATSATQQSGLANNVEKSQTPSYMS 288
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 545 HSSKVSGIMSGGKKARRKGHLSQLSTKD 628
HSSK S I SGG + + H L T +
Sbjct: 1003 HSSKESDIPSGGVFTKYRNHFGNLMTSE 1030
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 241 KEICCFNSPVIK 206
K ICCFNSP +K
Sbjct: 135 KAICCFNSPSLK 146
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 401 SLGLPGASVGKGDKRMRTQSYTSSSLPDLPIPANVPVISN 520
+L P + + G K S LP+ PIP P+++N
Sbjct: 666 TLDQPTSLLVLGCKAKNVSELILSYLPEKPIPDGAPIVTN 705
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 6.8
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2
Query: 285 FESDALKGKVGNSISKKFAVLIALLLRILKYYQNH*HLHSNTIYLSRQQFNQKKK 121
+E DA+ V +K+ A +AL++ L YY H HL ++ I LS Q + K+
Sbjct: 362 YERDAIF-IVDEGNAKEAASCLALMILCL-YYDLHMHLLAHPISLSASQSHLTKQ 414
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 223 NSPVIKNIEILPKPLTPTLKHYLS 152
N PV N E +P LTP +++ +S
Sbjct: 3521 NQPVFHNTEAVPFRLTPPIQYLIS 3544
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 392 VEYSLGLPGASVGKGDKRMRTQSYTSSSLPDLPIPANVPVISNN 523
++Y+ L S + + + T S S S P+LP P++ P++ N
Sbjct: 94 IDYNEALQIRSADENQQSVPTVSIASPSTPELP-PSSSPLLPPN 136
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 253 KLHFKEICCFNSPVIKNIEILPKPLTPTLKHYLS 152
KLH E+ N ++ + E L + ++P ++ YLS
Sbjct: 880 KLHLLELLFMNGLLLPDSEQLSEHVSPDMQSYLS 913
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 194 YFNILNNRAIKTANFFEMEFPTLPFNASDSNDY 292
Y N+LNN E+ T+ A DS+ Y
Sbjct: 452 YTNVLNNHCKNLEKLIELVETTIDLEALDSHQY 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,885
Number of Sequences: 5004
Number of extensions: 48020
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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