Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7h09
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0318 + 15710834-15711775                                         29   2.3  
04_01_0056 - 579934-579993,580064-580243,580349-580507,581004-58...    29   2.3  
02_05_0426 - 28881671-28881753,28882130-28882621,28882802-288828...    29   2.3  
02_01_0404 - 2945611-2948802                                           29   2.3  
06_03_1248 + 28685911-28687719                                         28   5.3  
01_06_1163 - 35018862-35019623,35019702-35019951,35020871-35020929     28   7.0  
10_08_0204 + 15780718-15780783,15781674-15781731,15781982-157821...    27   9.2  

>08_02_0318 + 15710834-15711775
          Length = 313

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +2

Query: 437 DKRMRTQSYTSSSLPDLPIPANVPVISNNTTHERRRHSSKVSGIM 571
           ++RMR ++Y  ++L  +P+P  V  ++ ++  E  R +S V+  +
Sbjct: 220 NRRMRARAYALAALVVVPLPVQVVALALSSVWETPRRTSPVAAFL 264


>04_01_0056 -
           579934-579993,580064-580243,580349-580507,581004-581050,
           583772-583895,584093-584956
          Length = 477

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 528 VVLLDITGTLAGIGKSGRLLLV*DCVRILLSPLPT 424
           V+LL + G++AG+     +L V  C+ +   P PT
Sbjct: 269 VILLAVVGSVAGVAAMVSVLAVDSCIGLEFEPFPT 303


>02_05_0426 -
           28881671-28881753,28882130-28882621,28882802-28882864,
           28883251-28883440,28883534-28883642,28883952-28884363,
           28884967-28885196,28885294-28885403
          Length = 562

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 265 G*GGKLHFKEICCFNSPVIKNIEILP-KPLTPTLKHYLSVQT 143
           G G  L F E C F  P++  I   P KP T +++ + S +T
Sbjct: 245 GTGKDLRFPECCLFALPILSGISFQPQKPGTVSIRDFCSGET 286


>02_01_0404 - 2945611-2948802
          Length = 1063

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
 Frame = +3

Query: 150 TDK*CLSVGVSGFGNISIFLITGLLKQQIS---LKWSFPPYPLMRQIQMTIQDLLKSHCQ 320
           TD    S G+ G  + S+  +TGLL+  +S   L    P   LM    +T+ D+  +H  
Sbjct: 90  TDVSLASKGLEGRISPSLGNLTGLLRLNLSHNSLSGGLP-LELMASSSITVLDISFNH-- 146

Query: 321 AQKTTVNGAVHQDPSRDVVLMMN*LNIA*DCRVLQLVKVTKECAHNLI 464
                + G +H+ PS   V  +  LNI+ +    Q    T E   NL+
Sbjct: 147 -----LKGEIHELPSSTPVRPLQVLNISSNSFTGQFPSATWEMMKNLV 189


>06_03_1248 + 28685911-28687719
          Length = 602

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +2

Query: 407 GLPGASVGKGDKRMRTQSYTSSSLPDLPIPANVPVISNNTTHERRRHSSKVSGIMSGGKK 586
           G P +S    D   R+ S+T++S  D P+P+ +    +++ H     S   S ++S    
Sbjct: 20  GRPPSSPRSSDTTRRS-SFTAASSSDKPVPSFLRPTVSSSLHSSSSSSPSSSSLLSSSPS 78

Query: 587 ARRKG 601
           ++  G
Sbjct: 79  SKGTG 83


>01_06_1163 - 35018862-35019623,35019702-35019951,35020871-35020929
          Length = 356

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 488 PIPANVPVISNNTTHERRRHSSKVSGIMSGGKKARRKGHLSQLSTKD 628
           P+P   P  ++ TTH R R  +K    +  G   R    L+  S +D
Sbjct: 54  PMPPMAPATNSGTTHARSRSKAKPVINLDDGDNVRTAKRLTWASDED 100


>10_08_0204 +
           15780718-15780783,15781674-15781731,15781982-15782142,
           15782221-15782982
          Length = 348

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 488 PIPANVPVISNNTTHERRRHSSKVSGIMSGGKKARRKGHLSQLSTKD 628
           P+P   P  ++ TTH R R  +K    +  G   R    L+  S +D
Sbjct: 46  PMPPMAPTTNSGTTHARSRSKAKPVINLDDGDDVRTAKRLTWASDED 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,937,498
Number of Sequences: 37544
Number of extensions: 281376
Number of successful extensions: 696
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)