Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7h09
         (628 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U36501-1|AAC50743.1|  688|Homo sapiens SP100-B protein.                35   0.27 
L79988-1|AAL77438.1|  403|Homo sapiens nuclear autoantigen protein.    35   0.27 
L79987-1|AAL77439.1|  212|Homo sapiens nuclear autoantigen protein.    35   0.27 
AF255565-1|AAK51202.1|  885|Homo sapiens nuclear body protein SP...    35   0.27 
AF056322-1|AAC39790.1|  879|Homo sapiens SP100-HMG nuclear autoa...    35   0.27 
AC010149-1|AAY14879.1|  843|Homo sapiens unknown protein.              35   0.27 

>U36501-1|AAC50743.1|  688|Homo sapiens SP100-B protein.
          Length = 688

 Score = 34.7 bits (76), Expect = 0.27
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 449 RTQSYTSSSLPDLPIPANVPVISNNTTHER--RRHSSKVSGIMSGGKKARRKGHLS 610
           RT+S  +S + D     N   +  ++   R  RRH SKV+G+  G KK R + HL+
Sbjct: 505 RTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLT 560


>L79988-1|AAL77438.1|  403|Homo sapiens nuclear autoantigen protein.
          Length = 403

 Score = 34.7 bits (76), Expect = 0.27
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 449 RTQSYTSSSLPDLPIPANVPVISNNTTHER--RRHSSKVSGIMSGGKKARRKGHLS 610
           RT+S  +S + D     N   +  ++   R  RRH SKV+G+  G KK R + HL+
Sbjct: 29  RTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLT 84


>L79987-1|AAL77439.1|  212|Homo sapiens nuclear autoantigen protein.
          Length = 212

 Score = 34.7 bits (76), Expect = 0.27
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 449 RTQSYTSSSLPDLPIPANVPVISNNTTHER--RRHSSKVSGIMSGGKKARRKGHLS 610
           RT+S  +S + D     N   +  ++   R  RRH SKV+G+  G KK R + HL+
Sbjct: 29  RTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLT 84


>AF255565-1|AAK51202.1|  885|Homo sapiens nuclear body protein
           SP100C protein.
          Length = 885

 Score = 34.7 bits (76), Expect = 0.27
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 449 RTQSYTSSSLPDLPIPANVPVISNNTTHER--RRHSSKVSGIMSGGKKARRKGHLS 610
           RT+S  +S + D     N   +  ++   R  RRH SKV+G+  G KK R + HL+
Sbjct: 505 RTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLT 560


>AF056322-1|AAC39790.1|  879|Homo sapiens SP100-HMG nuclear
           autoantigen protein.
          Length = 879

 Score = 34.7 bits (76), Expect = 0.27
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 449 RTQSYTSSSLPDLPIPANVPVISNNTTHER--RRHSSKVSGIMSGGKKARRKGHLS 610
           RT+S  +S + D     N   +  ++   R  RRH SKV+G+  G KK R + HL+
Sbjct: 505 RTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLT 560


>AC010149-1|AAY14879.1|  843|Homo sapiens unknown protein.
          Length = 843

 Score = 34.7 bits (76), Expect = 0.27
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 449 RTQSYTSSSLPDLPIPANVPVISNNTTHER--RRHSSKVSGIMSGGKKARRKGHLS 610
           RT+S  +S + D     N   +  ++   R  RRH SKV+G+  G KK R + HL+
Sbjct: 469 RTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLT 524


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,273,873
Number of Sequences: 237096
Number of extensions: 1642284
Number of successful extensions: 3494
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3494
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)