Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7h09
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35595-3|CAA84641.1|  215|Caenorhabditis elegans Hypothetical pr...    36   0.031
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    28   6.3  

>Z35595-3|CAA84641.1|  215|Caenorhabditis elegans Hypothetical
           protein C01G6.2 protein.
          Length = 215

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
 Frame = -1

Query: 214 VIKNIEILP--KPLTPTLKHYLSVQTTI*SEKKEKNRTQILYVDII 83
           V++N+E+L    P TPT KH L ++T + + KK +N+  ++ + ++
Sbjct: 125 VLQNLEVLEWLPPTTPTTKHLLELETIVSTRKKVQNQLVVVRLQVL 170


>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
            protein R11G1.1 protein.
          Length = 1656

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 476  LPDLPIPANVPVISNNTTHERRRHSSKVSGIMSGG 580
            LP LP+P  VP+ ++ +T      + K +G   GG
Sbjct: 987  LPSLPLPLPVPITTSASTTNLEETTGKENGREGGG 1021


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,444,781
Number of Sequences: 27780
Number of extensions: 265028
Number of successful extensions: 765
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)