Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7h03
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    26   0.27 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   7.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.7  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 337 EISPLVFLVV-FLICTVLIVVLMRFAHNHLILAVTVVHRHHNGSTNY 200
           EIS ++F V+   I  VL +++        +L  TV   H +G TN+
Sbjct: 223 EISTMLFFVLPMTIIIVLYILIAIKLRRSRMLTATVNRNHLSGGTNH 269


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -3

Query: 388 HPL-DYFNESPYKWQCPPEISPLVF 317
           HP  D+F +   KW   P +S +VF
Sbjct: 259 HPTYDWFEKLELKWFAVPAVSGMVF 283


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 515 KYKCRVKIY*FTTKVRFNYFYIVQISGLSTAPGILQ 408
           ++   +K Y   + V FN+ +I  ++  STA    Q
Sbjct: 296 EFNLTIKYYKSGSTVPFNFMFIADLNNQSTASDFKQ 331


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 352 WQCPPEISPLVFLVVFLICTVL--IVVLMRFAH 260
           W+    +   + L+VF + TVL  IV+L R  H
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAPH 457


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 352 WQCPPEISPLVFLVVFLICTVL--IVVLMRFAH 260
           W+    +   + L+VF + TVL  IV+L R  H
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAPH 457


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 352 WQCPPEISPLVFLVVFLICTVL--IVVLMRFAH 260
           W+    +   + L+VF + TVL  IV+L R  H
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAPH 457


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 352 WQCPPEISPLVFLVVFLICTVL--IVVLMRFAH 260
           W+    +   + L+VF + TVL  IV+L R  H
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAPH 457


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 352 WQCPPEISPLVFLVVFLICTVL--IVVLMRFAH 260
           W+    +   + L+VF + TVL  IV+L R  H
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAPH 457


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 352 WQCPPEISPLVFLVVFLICTVL--IVVLMRFAH 260
           W+    +   + L+VF + TVL  IV+L R  H
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAPH 457


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 352 WQCPPEISPLVFLVVFLICTVL--IVVLMRFAH 260
           W+    +   + L+VF + TVL  IV+L R  H
Sbjct: 493 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAPH 525


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 352 WQCPPEISPLVFLVVFLICTVL--IVVLMRFAH 260
           W+    +   + L+VF + TVL  IV+L R  H
Sbjct: 493 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAPH 525


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 305 KYNQKN*RRNFWWTLPFIWAL 367
           KY +    R  W T+  +WA+
Sbjct: 293 KYAKHKNNRRVWLTILLVWAI 313


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 332 FSVSFFGCISNMYRINC 282
           F +SFFGC   +   +C
Sbjct: 63  FVISFFGCCGAIRESHC 79


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 81  QKSINFRFHTSVIKLNRQIKK 19
           +K ++ RF+  V KL   IKK
Sbjct: 551 KKGVSLRFYNVVYKLIDNIKK 571


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,105
Number of Sequences: 438
Number of extensions: 3782
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)