Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7g18
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.2
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 27 2.9
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 27 2.9
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 26 3.8
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 3.8
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 3.8
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 6.6
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 8.8
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 25 8.8
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 25 8.8
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 8.8
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 584 IACLVPYLKSFSSNVGSHTFLNTLKSILI 498
I C++ K S+ G +TF+N L+S LI
Sbjct: 97 IICVIGLWKGLSAMSGKNTFINGLQSYLI 125
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 454 VPKLILLQNPIKWLMIKIDFSVLRNVWDPTFEEKDFKYGTKQA 582
VP+L+ L +PIK + +D S + P F KD G++ A
Sbjct: 574 VPRLMFLPDPIKVTLENLDDSYREQIEIP-FNPKDPSMGSRSA 615
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -2
Query: 534 PHVS*YTEIYFDHQPFNRVLKQYQFRYAFYVF 439
PH+ +F H+ F+ +L +Y+ + FY++
Sbjct: 55 PHLLLRRGAFFSHRDFDMILDRYEQKKPFYLY 86
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 197 LASGYNRLTYLIGTAILRPWQ*CCFFIAVSSTFYFTQ 87
+AS Y L + + PW CC +I + F FT+
Sbjct: 1 MASSYLSLAARLSQCWISPWSLCCLYI-LMQFFLFTK 36
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 526 NVWDPTFEEKDFKYGTKQAISRGYTSYKRWS 618
N WD F + D K ++ I ++K WS
Sbjct: 834 NNWDINFSDDDLKLMNEEEIMEQIETFKAWS 864
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 526 NVWDPTFEEKDFKYGTKQAISRGYTSYKRW 615
N W PTF DF Y ++ + G+ S W
Sbjct: 175 NWWWPTFVYNDFMYEFERLYAFGFHSNNAW 204
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 533 GIQRLKKKISNTELNRQYHGVTQVISD 613
G+QR K +++T +N+Q G++ + +D
Sbjct: 1858 GLQRFKMNVASTVVNQQNAGLSSIGTD 1884
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 229 GINRPVYSITSYVTNLQNSFCYPQN 303
G+ VY T +++ N FCYP+N
Sbjct: 194 GLEYAVYDYT--ISSSMNEFCYPKN 216
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +1
Query: 157 VPIKYVRRLYPLASRWNTIKNLH 225
VP KY ++LY + + +T++N++
Sbjct: 467 VPYKYAKKLYSILNGGSTLRNVN 489
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 168 FNWNSHLAPMAIMLLFYSC--IFNILFHTINNFPFC*MIIQN 49
++WN L +A L + SC F F ++ N PFC M+ +
Sbjct: 103 YDWN--LTGVAARLGYLSCGLFFVSYFFSLKNNPFCLMLFSS 142
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 229 GINRPVYSITSYVTNLQNSFCYPQN 303
G+ VY T +++ N FCYP+N
Sbjct: 194 GLEYAVYDYT--ISSSMNEFCYPKN 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,278
Number of Sequences: 5004
Number of extensions: 54320
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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