Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7g16
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   2.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    24   7.1  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    23   9.4  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 15   VNFNNKKYIVHTTLQKIYIDC 77
            ++FN KK I +  L K+ IDC
Sbjct: 960  LHFNRKKIISNCNLYKVAIDC 980


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 143 LYSRVMSE-LVIRIVPLLTVIKQTINIYFL 57
           L + + SE  +IR   LLT ++QT NI+ L
Sbjct: 249 LLAAITSERTIIRHSFLLTAVRQTYNIFLL 278


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = +1

Query: 1   P*VRPSILTIKNISFIPLCKKYILIVCLMTVS 96
           P +  S+LT+ +  ++P+ + Y++ + + +VS
Sbjct: 144 PGINVSVLTLNSNFYVPVYRDYLMALNINSVS 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,330,057
Number of Sequences: 5004
Number of extensions: 22793
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)