Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7g14
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 34 0.017
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 31 0.088
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 31 0.15
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 28 0.82
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 28 0.82
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 26 3.3
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 3.3
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 26 3.3
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 26 4.4
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 4.4
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 26 4.4
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 7.7
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 7.7
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni... 25 7.7
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 33.9 bits (74), Expect = 0.017
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +2
Query: 338 EPIQPELDRSTTE--SMPQHTESFVIEQMVTVNSEEEMELKNEQTALESD-NKENSLDCE 508
EP TT S+ Q + M V E E+E KN T E+D N+++ +C+
Sbjct: 303 EPFDTNFPALTTRPLSICQRATDIIERSMNYVFGESELEEKNASTKTENDSNEDDKEECQ 362
Query: 509 -PVPKSAPNSRPQTPK 553
S P S TPK
Sbjct: 363 SSSTSSVPESTASTPK 378
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 31.5 bits (68), Expect = 0.088
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +2
Query: 275 EHVTHKIESISDMKVQNECYIEPIQPELDRSTTESMP--QHTESFVIEQMVTVNSEEEME 448
E + K+E + + + + YI ++ LDR+ T +P + ++ E+ V+ E+E
Sbjct: 334 EVLREKVEKLQALSDEKDFYISKLEKSLDRNDTTPVPSDEKLSNYAAEKENLVSRISELE 393
Query: 449 LKNEQTAL--ESDNKENS 496
EQ + E DN+ S
Sbjct: 394 HTIEQLTINNERDNERMS 411
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 30.7 bits (66), Expect = 0.15
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 290 KIESISDMKVQNECYIEPIQPELDRSTTESMPQH-TESFVIEQMVTVNSEEEMELKNEQT 466
K++++S + Y+ PE TE M Q T++ + Q +++SE+E KN
Sbjct: 238 KLDTLSKSIINIFDYLLSHLPESWSIITEHMAQELTKATYVSQSSSISSEDEEIAKNADV 297
Query: 467 ALESDNKENSLD 502
E DN D
Sbjct: 298 PAEVDNNSTKAD 309
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 28.3 bits (60), Expect = 0.82
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +2
Query: 272 TEHVTHKIESISDMKVQNECYIEPIQPELDRSTTESMPQHTESFVIEQM----VTVNSEE 439
T VT + +++ +++ E S+TE+ T S E VTVNS E
Sbjct: 987 TSAVTELPDPNHQLEMSTTTHVQHPNSETIPSSTENQYFDTTSGAFEANSNTEVTVNSNE 1046
Query: 440 EMELKNEQTALESDNKENSLDCEPV 514
+ + TA ESDN ++ L + V
Sbjct: 1047 VSQPFDFDTANESDNDDDELPVQQV 1071
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 28.3 bits (60), Expect = 0.82
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 266 VITEHVTHKIESISDMKV---QNECYIEPIQPELDRSTTESMPQHT 394
V TE+ + +++ SD K Q +P QP+ ++STT HT
Sbjct: 127 VKTENFANDLDTTSDSKPVVHQTRATRKPAQPKAEKSTTSKSKSHT 172
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 266 LFQSSKAPATEEHDLVIVFGST 201
+ + SK P + HD+V+V GST
Sbjct: 322 VLKDSKVPKADVHDIVLVGGST 343
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1136
Score = 26.2 bits (55), Expect = 3.3
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 365 STTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPKSAP 529
STTE + + +F+IE + V + E+ K + L +D S+D EP P P
Sbjct: 1049 STTELIGKKERTFIIEHYLIVLNTLELLPKEDTWILVTD---MSVDKEPDPNFLP 1100
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 330 VTLNRYSQN*TGQLRNRCHSILSHLLLNKWLR*ILKK 440
++LN S + L H IL HL LNK ++K+
Sbjct: 1 MSLNNLSNSYNQYLAQESHQILRHLFLNKQYSPLVKR 37
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 395 ESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPV-PKSAPNSRP 541
E F +Q +NS E ++ +Q +S K NS+ + V P+ P+ P
Sbjct: 167 EVFDRKQSAEINSPIEKDVNPQQNISDSSIKNNSIHSDEVNPEVRPDLTP 216
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +2
Query: 362 RSTTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPKSAP 529
R + S + F T+ +E + E ++ QT K NSL+C+ + P
Sbjct: 159 RESCLSTETSSSKFSAVTAATITNETQSEKRSSQTDPSLPFKTNSLNCDVTYEEGP 214
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 428 NSEEEMELKNEQTALESDNKENSLDCEPVPKSAPNSRPQT 547
+SEEE EL + ALE N + ++ + P SR T
Sbjct: 33 DSEEESELDTNKQALEHINAQKNITHNENKSAEPLSRQST 72
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 7.7
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +2
Query: 362 RSTTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPKSAPNSRP 541
+S+ ES+ ES Q+ S+ ++ELK + + E L C + K +S
Sbjct: 656 KSSIESLISQLESIRNSQIDIAFSKNQLELKLQLYETKLKEYEQHLSCVNISKKQVSSSS 715
Query: 542 QT 547
T
Sbjct: 716 DT 717
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 7.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 350 PELDRSTTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSL 499
PE R+T+ Q E E+M EEE E+ N ++ E ++K L
Sbjct: 340 PETQRTTSRIETQE-EEIKEEEMEGEEEEEEEEVPNYESENELEDKVGDL 388
>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 497 LDCEPVPKSAPNSRPQT 547
L C P+PKS NS QT
Sbjct: 32 LFCSPIPKSVANSPKQT 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,693
Number of Sequences: 5004
Number of extensions: 44777
Number of successful extensions: 171
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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