Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7g13
(599 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X75071-1|CAA52965.1| 398|Homo sapiens thyrotropin-releasing hor... 29 9.4
X72089-1|CAA50979.1| 398|Homo sapiens TRH receptor protein. 29 9.4
S75283-1|AAB32222.1| 398|Homo sapiens thyrotropin-releasing hor... 29 9.4
D85376-1|BAA12796.1| 398|Homo sapiens thyrotropin-releasing hor... 29 9.4
D16845-1|BAA04120.1| 398|Homo sapiens human thyrotropin-releasi... 29 9.4
BC113360-1|AAI13361.1| 398|Homo sapiens thyrotropin-releasing h... 29 9.4
BC105045-1|AAI05046.1| 398|Homo sapiens thyrotropin-releasing h... 29 9.4
AY493373-1|AAR84356.1| 398|Homo sapiens thyrotropin-releasing h... 29 9.4
AJ011701-1|CAA09746.1| 263|Homo sapiens thyrotropin-releasing h... 29 9.4
>X75071-1|CAA52965.1| 398|Homo sapiens thyrotropin-releasing
hormone receptor protein.
Length = 398
Score = 29.5 bits (63), Expect = 9.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 423 ASSCRIEMILIDLEIYIFLRIEYGYCLSFMYKAAIVAFMFAFQASICRSYHYRYHLNQS 599
ASSC I I+ I I I+ + +F I+ F++AF + C + + LN S
Sbjct: 111 ASSCSITAFTIERYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSLYCMLWFFLLDLNIS 169
>X72089-1|CAA50979.1| 398|Homo sapiens TRH receptor protein.
Length = 398
Score = 29.5 bits (63), Expect = 9.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 423 ASSCRIEMILIDLEIYIFLRIEYGYCLSFMYKAAIVAFMFAFQASICRSYHYRYHLNQS 599
ASSC I I+ I I I+ + +F I+ F++AF + C + + LN S
Sbjct: 111 ASSCSITAFTIERYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSLYCMLWFFLLDLNIS 169
>S75283-1|AAB32222.1| 398|Homo sapiens thyrotropin-releasing
hormone receptor protein.
Length = 398
Score = 29.5 bits (63), Expect = 9.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 423 ASSCRIEMILIDLEIYIFLRIEYGYCLSFMYKAAIVAFMFAFQASICRSYHYRYHLNQS 599
ASSC I I+ I I I+ + +F I+ F++AF + C + + LN S
Sbjct: 111 ASSCSITAFTIERYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSLYCMLWFFLLDLNIS 169
>D85376-1|BAA12796.1| 398|Homo sapiens thyrotropin-releasing
hormone receptor protein.
Length = 398
Score = 29.5 bits (63), Expect = 9.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 423 ASSCRIEMILIDLEIYIFLRIEYGYCLSFMYKAAIVAFMFAFQASICRSYHYRYHLNQS 599
ASSC I I+ I I I+ + +F I+ F++AF + C + + LN S
Sbjct: 111 ASSCSITAFTIERYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSLYCMLWFFLLDLNIS 169
>D16845-1|BAA04120.1| 398|Homo sapiens human thyrotropin-releasing
hormone receptor protein.
Length = 398
Score = 29.5 bits (63), Expect = 9.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 423 ASSCRIEMILIDLEIYIFLRIEYGYCLSFMYKAAIVAFMFAFQASICRSYHYRYHLNQS 599
ASSC I I+ I I I+ + +F I+ F++AF + C + + LN S
Sbjct: 111 ASSCSITAFTIERYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSLYCMLWFFLLDLNIS 169
>BC113360-1|AAI13361.1| 398|Homo sapiens thyrotropin-releasing
hormone receptor protein.
Length = 398
Score = 29.5 bits (63), Expect = 9.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 423 ASSCRIEMILIDLEIYIFLRIEYGYCLSFMYKAAIVAFMFAFQASICRSYHYRYHLNQS 599
ASSC I I+ I I I+ + +F I+ F++AF + C + + LN S
Sbjct: 111 ASSCSITAFTIERYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSLYCMLWFFLLDLNIS 169
>BC105045-1|AAI05046.1| 398|Homo sapiens thyrotropin-releasing
hormone receptor protein.
Length = 398
Score = 29.5 bits (63), Expect = 9.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 423 ASSCRIEMILIDLEIYIFLRIEYGYCLSFMYKAAIVAFMFAFQASICRSYHYRYHLNQS 599
ASSC I I+ I I I+ + +F I+ F++AF + C + + LN S
Sbjct: 111 ASSCSITAFTIERYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSLYCMLWFFLLDLNIS 169
>AY493373-1|AAR84356.1| 398|Homo sapiens thyrotropin-releasing
hormone receptor protein.
Length = 398
Score = 29.5 bits (63), Expect = 9.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 423 ASSCRIEMILIDLEIYIFLRIEYGYCLSFMYKAAIVAFMFAFQASICRSYHYRYHLNQS 599
ASSC I I+ I I I+ + +F I+ F++AF + C + + LN S
Sbjct: 111 ASSCSITAFTIERYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSLYCMLWFFLLDLNIS 169
>AJ011701-1|CAA09746.1| 263|Homo sapiens thyrotropin-releasing
hormone receptor protein.
Length = 263
Score = 29.5 bits (63), Expect = 9.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 423 ASSCRIEMILIDLEIYIFLRIEYGYCLSFMYKAAIVAFMFAFQASICRSYHYRYHLNQS 599
ASSC I I+ I I I+ + +F I+ F++AF + C + + LN S
Sbjct: 111 ASSCSITAFTIERYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSLYCMLWFFLLDLNIS 169
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,953,303
Number of Sequences: 237096
Number of extensions: 1654775
Number of successful extensions: 9768
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9768
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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