Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7g10
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    30   0.37 
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    29   0.48 
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    29   0.64 
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    28   1.1  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    28   1.5  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   2.6  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    27   2.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   2.6  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    27   3.4  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   4.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   4.5  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   4.5  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   7.9  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    25   7.9  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
 Frame = +3

Query: 384 QLNDLPLVFKRCDEIETLIKETYKKIQGKKAIDDLTKPKDDQSIKNKTLVKAINWWEDDY 563
           QLND   ++++  + E L    +KKIQ  K  +DL +  D      K  ++++N   D Y
Sbjct: 246 QLNDFIALYEK--DREQLHSRDWKKIQLAKTQNDLGEFLDYIISNYKVPIESLNQPSDQY 303

Query: 564 ESDLSQISLEKDEDKISEDIM-KSRYFIDMI 653
               + +        +   IM +  YF+DM+
Sbjct: 304 SFHDAYLQSYTHRYPVHRAIMCRCEYFLDML 334


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 10/209 (4%)
 Frame = +3

Query: 99  RTDLNYQKKAHDKQLCEAVLRLSSVLARYSALYNEASECLHNNLQVQKKKYMQELIKTVE 278
           + +L+ +    + QL EA  RL +  A Y  L  E     H  L +  +K    L+  + 
Sbjct: 220 KENLSSELSISNIQLKEAKERLEAANASYQKLRRE-----HKELALYHEKKTHSLVCNLN 274

Query: 279 NRIIEIKNELQNLECSQCHFVGN--GVAREILTPDNTQLNDLPLVFKR--CDEIETLIKE 446
                  + ++N   S  H   N     R  L        +  L FK    D +E   +E
Sbjct: 275 GERKSFGDFVENEVKSYKHEYANICESLRRALVLIQGSCTEKILRFKEKILDLLEMKQQE 334

Query: 447 TYKKIQGKKAIDDLTKPKDDQSIKNKTL-VKAI----NWWEDDYESDLSQISLEKDEDKI 611
              +I   +  +DLT  K  + I    + VK      ++ E +YE  +S + +E  EDK+
Sbjct: 335 ENDRISHIEYENDLTVKKLKRRISELEMAVKEYESEKSYSEKEYEEKISSLRIEL-EDKL 393

Query: 612 SE-DIMKSRYFIDMIKSHEKSRQTISLMR 695
           +E D+++++   +  K H  S +   L +
Sbjct: 394 AEIDMLRNKLLKEEHKHHSTSEKLEELSK 422


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +3

Query: 528  LVKAINWWEDDYESDLSQISLEKDEDKISED---IMKSRYFIDMIKSHEKSR--QTISLM 692
            + KA+N  EDD    L+++ LE    K+  D   I+KS   +D I+ H      +T+  M
Sbjct: 1073 IYKAVNELEDDNGRPLNKLFLELPSKKLYPDYYMIIKSPIALDAIRKHINGTFYKTLEAM 1132

Query: 693  RS 698
            +S
Sbjct: 1133 KS 1134


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 225 NLQVQKKKYMQELIKTVENRIIEIKNELQNLECSQ 329
           +L++   K  Q+LIKT+E+ + +I+NE  +L   Q
Sbjct: 337 DLKLACVKEKQQLIKTLESSLTQIRNERDSLVAKQ 371


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 504 DQSIKNKTLVKAINWW-EDDYES--DLSQISLEKDEDKISEDIMKSRYF 641
           DQSI N   ++  ++   DD++S  DLS  +LE  E     D+ + RYF
Sbjct: 31  DQSITNSVSLEKHDFQGSDDHDSSTDLSDSTLEDVEGSEWADVSRGRYF 79


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
 Frame = +3

Query: 210 ECL---HNNLQV---QKKKYMQELIKTVENRIIEIKNELQNLECSQCHFVGNGVAREILT 371
           ECL   HN ++     KK   + + K +E   + +   +  +      F    ++   L 
Sbjct: 90  ECLVTYHNGIRAIYNTKKNEAKNMYKEIERLSVILGESVDEVNFVNGDF--EDISDIKLE 147

Query: 372 PDNTQLNDLPLVFKRCDEIETLIKETYKKIQGKKAIDDLTKPKDDQS 512
             + +LN+L  +++   E    IKE  KK+Q   +I  L+ P DD S
Sbjct: 148 QLSAKLNELHQIYRLRKEKNIEIKEELKKLQDSLSI-KLSMPADDLS 193


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 411  KRCDEIETLIKETYKKIQGKKAID-DLTKPKDDQSIKNKTLVKA 539
            KR D++E  + E   ++ G++ ++ D  K K ++  KNK  VKA
Sbjct: 1089 KRVDQLEEALNEKLARLVGEQMVEGDKEKDKTNEE-KNKDEVKA 1131


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 279 NRIIE-IKNELQNLECSQCH 335
           NR++E IKNEL++  C  CH
Sbjct: 133 NRLLEKIKNELESFRCLCCH 152


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 411  KRCDEIETLIKETYKKIQGKKAID-DLTKPKDDQSIKNKTLVKA 539
            KR D++E  + E   ++ G++ ++ D  K K ++  KNK  VKA
Sbjct: 1089 KRVDQLEEALNEKLARLVGEQMVEGDKEKDKTNEE-KNKDEVKA 1131


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 483 DLTKPKDDQSIKNKTLVKAINWWEDDYESDLSQIS 587
           DL +  ++ +++ K     +++W +D + D+S IS
Sbjct: 66  DLLRSYENVAMERKECANQLSYWGEDCDDDISDIS 100


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 33   KMSSNFYFIKWKNVLNSLEALLRTDLN 113
            K+  N Y   W N+  SL  LL TD N
Sbjct: 1444 KILLNIYEKSWLNIAESLTILLSTDAN 1470


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = +3

Query: 66  KNVLNSLEALLRTDLNYQKKAHDKQLCEAVLRLSSVLARYSALYNEASECLHNNLQ--VQ 239
           K +   +E   R    ++ K+ + Q    V  L   L    +LYN  +E L+NN Q  + 
Sbjct: 275 KELEEEVETQKRLTALWESKSSELQ--SEVAALQEKLTSQQSLYNNVTEELNNNKQQLLI 332

Query: 240 KKKYMQELIKTVENRIIEIKNELQNLECSQCHFVG 344
            +  ++EL +  ++ + E++   +N   S    VG
Sbjct: 333 SENSLRELQEKYDSVVSELQVVKENKNTSVSAGVG 367


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 231 QVQKKKYMQELIKTVENRIIEIKNELQNLECSQCHFVGNGVAREILTPDNTQLN-DLPL 404
           +V   K      + +  + +     + +LEC +CH   + VA +    D+  LN  +PL
Sbjct: 109 KVSSSKICASCGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPL 167


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +3

Query: 438 IKETYKKIQGKKAIDDLTKPKDDQSIKNKTLVKAINWWEDDYESDLSQISLEKD 599
           + ET + +    +IDDLTK KD+     +T++ A+ W   D   DL + +L  D
Sbjct: 36  LPETTEDVFHLMSIDDLTKVKDNAPENLQTII-AVLW---DKLEDLQKETLFDD 85


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 603 DKISEDIMKSRYFIDMIKSHEKSRQTISLMR 695
           DK+S+DI   RYF      + KS+   SL++
Sbjct: 250 DKVSDDINSGRYFFAK-DENSKSKSAASLVK 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,999
Number of Sequences: 5004
Number of extensions: 50083
Number of successful extensions: 206
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)