Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7g07
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   1.4  
SPAC25H1.03 |mug66|mug66|meiotically upregulated gene Mug66|Schi...    25   2.4  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   2.4  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   4.2  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    24   5.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.3  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    23   9.6  

>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 203 DLYSRDTTYCSIRTIAYINSTHFEGTHINIY 111
           DLY++D T    + +A +   H  G H+N Y
Sbjct: 3   DLYTKDWTDVKDKPVARVVFIHGFGEHVNAY 33


>SPAC25H1.03 |mug66|mug66|meiotically upregulated gene
           Mug66|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 169 IEQYVVSLLYRSMIRSPKISIAMGSYPY 252
           +EQ V ++  RS+   P +++  G+YPY
Sbjct: 130 VEQIVQAVNLRSLSYLPPVAMDSGNYPY 157


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 237 GIISLPTRWQKVIEKNTYIL 296
           G+  +  RW KV+++N+Y+L
Sbjct: 222 GLNHVVKRWSKVVDRNSYML 241


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 175 QYVVSLLYRSMIRSPKISIAMGS 243
           QY  +LL +S   SPKI+I+ G+
Sbjct: 233 QYTYNLLGKSTDESPKITISAGT 255


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 162 NCLYK*HPF*RHTHKHISI 106
           +CL++ HPF  H H  +S+
Sbjct: 588 SCLWEIHPFLNHFHPTVSL 606


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 21  FVFSCFILCTH*NTV 65
           F  SCF+ CTH +T+
Sbjct: 59  FSHSCFLFCTHPDTL 73


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 211 RSPKISIAMGSYPYLQDGKKLSKKILTY 294
           ++P  ++ +      +DGKK+SK++  Y
Sbjct: 578 KAPYKNVIVSGLVMAEDGKKMSKRLKNY 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,410,416
Number of Sequences: 5004
Number of extensions: 28905
Number of successful extensions: 57
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)