Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7g07
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    28   2.1  
12_01_0452 - 3566352-3567602,3568840-3569389,3570169-3570203           27   3.8  
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954...    27   3.8  
01_06_1722 - 39431480-39431626,39431760-39431882,39431986-394321...    27   3.8  
01_01_1231 + 9961783-9961817,9962612-9963161,9964441-9965691           27   3.8  
03_03_0032 + 13927959-13930040,13930322-13930798                       26   8.7  

>12_01_0798 +
           7314885-7314953,7315324-7315387,7315489-7315677,
           7316430-7316625,7316727-7316953,7317177-7318134,
           7320104-7321307,7321517-7321876,7321965-7323195,
           7323334-7323599,7323738-7326335
          Length = 2453

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 65  YIVFLRVKVLSENEIDICLCVCLQNGC 145
           Y++    +V S+NE+ ICL V  +NGC
Sbjct: 809 YLIRWLKEVASQNELSICLAV-FENGC 834


>12_01_0452 - 3566352-3567602,3568840-3569389,3570169-3570203
          Length = 611

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 187 SLLYRSMIRSPKISIAMGSYPYLQDGKKLSKKILTY 294
           S L ++++ SP++ +A     +L DG  L +  L Y
Sbjct: 144 STLLKALLESPRVDVAGALKKWLNDGNTLDRSELFY 179


>02_02_0375 +
           9543411-9543872,9547222-9547290,9547382-9547384,
           9548336-9548422,9549027-9549094,9549192-9549333
          Length = 276

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 184 VSLLYRSMIRSPKISIAMGSYPYLQDGKKL-SKKILTYFS*M*INNI 321
           +SL +RS +  P+   ++  +P    G ++ ++K+  YF    IN+I
Sbjct: 121 ISLAFRSFVAEPRFIPSLSMFPTFDVGDRIVAEKVTYYFRKPCINDI 167


>01_06_1722 -
           39431480-39431626,39431760-39431882,39431986-39432131,
           39432249-39432457,39432539-39432633,39433307-39433369,
           39433828-39433905,39434009-39434125,39434496-39434567,
           39434675-39434776,39434874-39435048,39435171-39435226,
           39435887-39435967
          Length = 487

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 133 SKWVLFI*AIVRIEQYVVSLLYRSMIRSPKISIAMGSYP 249
           SK+VLF+   VR+    +  L + M ++P+I I  G YP
Sbjct: 172 SKYVLFLDDDVRLHPGTIGALTKEMEKNPEIFIQTG-YP 209


>01_01_1231 + 9961783-9961817,9962612-9963161,9964441-9965691
          Length = 611

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 187 SLLYRSMIRSPKISIAMGSYPYLQDGKKLSKKILTY 294
           S L ++++ SP++ +A  +  +L DG  L +  L Y
Sbjct: 144 STLLKALLVSPRVDVAGATKKWLNDGNTLERSELFY 179


>03_03_0032 + 13927959-13930040,13930322-13930798
          Length = 852

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 263 PSCR*GYDPIAIEILGLLIIDLYSRDTTYC 174
           P+ R  YD     +LGLLI+   +RD   C
Sbjct: 463 PAARRSYDHPQFNLLGLLILKRLARDHDNC 492


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,008,500
Number of Sequences: 37544
Number of extensions: 148111
Number of successful extensions: 234
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)