Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7g07
         (338 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110815-1|AAI10816.1|  759|Homo sapiens LIM domain and actin bi...    30   1.6  
BC001247-1|AAH01247.2|  660|Homo sapiens LIMA1 protein protein.        30   1.6  
AK222971-1|BAD96691.1|  759|Homo sapiens epithelial protein lost...    30   1.6  
AK000372-1|BAA91120.1|  704|Homo sapiens protein ( Homo sapiens ...    30   1.6  
AF198454-1|AAF23755.1|  759|Homo sapiens epithelial protein lost...    30   1.6  
AB209512-1|BAD92749.1|  769|Homo sapiens epithelial protein lost...    30   1.6  
AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens ...    24   5.2  
U52077-1|AAC52010.1|  343|Homo sapiens mariner transposase protein.    28   8.5  

>BC110815-1|AAI10816.1|  759|Homo sapiens LIM domain and actin
           binding 1 protein.
          Length = 759

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 199 RSMIRSPKISIAMGSYPYLQDGKKL 273
           RS +RSP  ++  G YP+++DG+ L
Sbjct: 127 RSRLRSPPEALVQGRYPHIKDGEDL 151


>BC001247-1|AAH01247.2|  660|Homo sapiens LIMA1 protein protein.
          Length = 660

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 199 RSMIRSPKISIAMGSYPYLQDGKKL 273
           RS +RSP  ++  G YP+++DG+ L
Sbjct: 29  RSRLRSPPEALVQGRYPHIKDGEDL 53


>AK222971-1|BAD96691.1|  759|Homo sapiens epithelial protein lost in
           neoplasm beta variant protein.
          Length = 759

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 199 RSMIRSPKISIAMGSYPYLQDGKKL 273
           RS +RSP  ++  G YP+++DG+ L
Sbjct: 127 RSRLRSPPEALVQGRYPHIKDGEDL 151


>AK000372-1|BAA91120.1|  704|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20365 fis, clone HEP17877. ).
          Length = 704

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 199 RSMIRSPKISIAMGSYPYLQDGKKL 273
           RS +RSP  ++  G YP+++DG+ L
Sbjct: 127 RSRLRSPPEALVQGRYPHIKDGEDL 151


>AF198454-1|AAF23755.1|  759|Homo sapiens epithelial protein lost in
           neoplasm beta protein.
          Length = 759

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 199 RSMIRSPKISIAMGSYPYLQDGKKL 273
           RS +RSP  ++  G YP+++DG+ L
Sbjct: 127 RSRLRSPPEALVQGRYPHIKDGEDL 151


>AB209512-1|BAD92749.1|  769|Homo sapiens epithelial protein lost in
           neoplasm beta variant protein.
          Length = 769

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 199 RSMIRSPKISIAMGSYPYLQDGKKL 273
           RS +RSP  ++  G YP+++DG+ L
Sbjct: 136 RSRLRSPPEALVQGRYPHIKDGEDL 160


>AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45585 fis, clone BRTHA3013882. ).
          Length = 201

 Score = 24.2 bits (50), Expect(2) = 5.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 107 IDICLCVCLQNGC 145
           + +CLCVCL + C
Sbjct: 56  VSVCLCVCLVSVC 68



 Score = 23.0 bits (47), Expect(2) = 5.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 62  CYIVFLRVKVLSENEIDICLCVCL 133
           C  V L + VLS   + +CLCVC+
Sbjct: 36  CVCVCLCLCVLS---VSVCLCVCV 56


>U52077-1|AAC52010.1|  343|Homo sapiens mariner transposase protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 207 DQKPQNFYSNGIISLPTRWQKVIEKN 284
           + +  +FY+ GI  L +RWQK ++ N
Sbjct: 313 ESRSTDFYATGINKLISRWQKCVDCN 338


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,724,429
Number of Sequences: 237096
Number of extensions: 921482
Number of successful extensions: 1176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1852524224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)