Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7g01
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.46
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 29 0.61
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 29 0.81
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 28 1.1
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 28 1.4
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 1.9
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 27 3.3
SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.3
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 26 5.7
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.7
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 26 5.7
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 25 7.5
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 25 9.9
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce... 25 9.9
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 29.5 bits (63), Expect = 0.46
Identities = 22/82 (26%), Positives = 38/82 (46%)
Frame = +2
Query: 125 ENNDTPPFVSIVLGDEASSTSGNLTDSSTQTETYVTLPYNGSVNDASLSFSKDFNINDLL 304
E +D+ S + G SSTS + T SST T + + + S + +S S + +
Sbjct: 118 EGSDSTLAASTISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSIT-SSIS 176
Query: 305 SNGNENFQQSLASKRYRRNSSD 370
S+ + + S AS +S+D
Sbjct: 177 SSASSSVSSSSASSSGSISSAD 198
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 29.1 bits (62), Expect = 0.61
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 23 FHNSSIEVMRKSSQQESIVSWDRSYYSSLHEICKENNDTPPFVSIVLGDEASSTSGNLTD 202
F+ IEV+R+ ++ +S ++ +Y S E + NDT P S ++ NL
Sbjct: 328 FYEIEIEVLREKVEKLQALSDEKDFYISKLEKSLDRNDTTPVPSDEKLSNYAAEKENLVS 387
Query: 203 SSTQTE-TYVTLPYNGSVNDASLS 271
++ E T L N ++ +S
Sbjct: 388 RISELEHTIEQLTINNERDNERMS 411
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 28.7 bits (61), Expect = 0.81
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Frame = +2
Query: 83 WDRSYYSSLHEICKEN--NDTPPFVSIVLGDEASSTSGNLTDSST---QTETYVTLPYNG 247
WD + SS H KEN D S++L TD +T + + + Y
Sbjct: 1092 WDNKHISSNHYEVKENVLVDEEDVWSVILKQREKDAMLEKTDETTSNRRLRAHHKIHYGE 1151
Query: 248 SVNDASLSFSKDFNINDLLSNGN 316
+N S D+ +ND S G+
Sbjct: 1152 DLNIYDNSDDTDYTVNDRSSPGS 1174
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 336 WRASVIDETPAMEMKRIRGHGKRRSVQNLVHR-AHQI*LITR 458
WR ++D PA K +R H KR + + R AHQ L TR
Sbjct: 548 WRKLLLDNGPAAFAKAVRNH-KRGLIMDTTWRDAHQSLLATR 588
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 539 SYKVRKRRLKSETNLFRDAIQRSRKPMNISRLNHSQN 649
SY+ ++R+++ + +R RKP NIS L H ++
Sbjct: 77 SYRRKRRKVRKPEIVKPTLRKRGRKPKNISTLEHDKS 113
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 527 NSSHSYKVRKRRLKSETNLFRDAIQRSRKPMNI---SRLNHSQNSS 655
NSS+S V L S+ +RD + R N+ S ++HS N+S
Sbjct: 303 NSSNSVPVEFNSLHSQNVDYRDEVDSLRPQFNVDEQSSISHSSNAS 348
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 3.3
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +2
Query: 173 ASSTSGNLTDSSTQTETYVTLPYNGSVNDASLSFSKDFNINDLLSNGNENFQQSLASKRY 352
A+ST N + + ++T + YN S D + S D N+N S + + + S +K
Sbjct: 560 AASTPANPVYNRSSSQT--SKGYNSSDYDLLRTHSLDENVNSPTSISSPSSKSSPFTKTT 617
Query: 353 RRNSSDGDEKDSRP 394
+++ D RP
Sbjct: 618 SKDTKSATTTDERP 631
>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 146 FVSIVLGDEASSTSGNLTDSSTQTETYVT 232
F +VLGD SS+SGN +T+ T V+
Sbjct: 14 FFQVVLGDYFSSSSGNPNLRTTKVYTVVS 42
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 263 SLSFSKDFNINDLLSNGNENFQQSLASKRYRRNSSDGDE 379
SLSFS D N +L +G + + YR N SDG++
Sbjct: 576 SLSFSYD---NKILVSGGADTDVNFWDLTYRNNLSDGEQ 611
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 5.7
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = -3
Query: 233 ALHMFLFVSNYPSSSQKLNLLRHRARYLRKAAYRCFLYISHAGMNNSCDPKKQSIPAESF 54
A+ +F+F+ +P + + +L ++A+YLRK Y H DPK I A +
Sbjct: 274 AVIVFVFIF-FPETHED-TILDYKAKYLRKTTGNTAYYTIH---ERERDPKNAMIQAATQ 328
Query: 53 YASL 42
SL
Sbjct: 329 AVSL 332
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +2
Query: 167 DEASSTSGNLTDSSTQTETYVTLPYNGSVNDASLSFSKDFNINDLLSNGNENFQQSLASK 346
+E + +GNL T TE VT+ + + + S +++ D+ + F+Q +
Sbjct: 477 EEVTKGTGNLELGETTTE--VTILEQENAANVTRSQAQEGRRTDMQKGNDREFRQYSGEQ 534
Query: 347 RYRR 358
RY R
Sbjct: 535 RYER 538
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 533 SHSYKVRKRRLKSETNLFRDAIQRSRKPMNISRLNHSQNSSPGGTPR 673
+H K R+R +E L ++ KP I R S+ TPR
Sbjct: 31 THQKKRRRRTTDAEATLLEQYFLKTPKPSLIERQELSKKLKSSMTPR 77
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 446 SNLMSSMYKILYTSSFSMASNPFHLHRWSFVDNACSP 336
++L YK++ SSFS SN +++F+ + P
Sbjct: 2 NSLQKGSYKVIPGSSFSKNSNGLLSIKYNFIPESVDP 38
>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -1
Query: 127 FFTYLMQG*IIAAIPRNNRFLLRAFTHHFNRTVVKNPNVFS 5
+F L I+ + + N+FL+ + H F+ V+++ V S
Sbjct: 178 YFMLLTSHFILNCVKQENQFLVYPYIHSFSNHVMRDDQVRS 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,389
Number of Sequences: 5004
Number of extensions: 52027
Number of successful extensions: 275
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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